bump: Update sawfish to v1.0 (#215)

* Update sawfish to v1.0

Author: williamrowell

docs/tools_containers.md

@@ -13,7 +13,7 @@ We directly use `deepvariant`, `deepvariant-gpu`, `pharmcat`, and `glnexus` cont
 | pb_wdl_base | <ul><li>htslib 1.20</li><li>bcftools 1.20</li><li>samtools 1.20</li><li>bedtools 2.31.0</li><li>python3.9</li><li>numpy 1.24.24</li><li>pandas 2.0.3</li><li>matplotlib 3.7.5</li><li>seaborn 0.13.2</li><li>pysam 0.22.1</li><li>vcfpy 0.13.8</li><li>biopython 1.83</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/6b13cc246dd44e41903d17a660bb5432cdd18dbe/docker/pb_wdl_base) | [sha256:4b889a1f21a6a7fecf18820613cf610103966a93218de772caba126ab70a8e87](https://quay.io/repository/pacbio/pb_wdl_base/manifest/pb_wdl_base@sha256:4b889a1f21a6a7fecf18820613cf610103966a93218de772caba126ab70a8e87) |
 | pbmm2 | <ul><li>pbmm2 1.17.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/9591749da92ca57f7283ca1c2268789c45fa341d/docker/pbmm2) | [pbmm2@sha256:5f3f4d1f5dbea5cd4c388ee26b2fecbbb7dbcef449343633e039dca3d3725859](https://quay.io/repository/pacbio/pbmm2/manifest/sha256:5f3f4d1f5dbea5cd4c388ee26b2fecbbb7dbcef449343633e039dca3d3725859) |
 | mosdepth | <ul><li>mosdepth 0.3.9</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/fa84fbf582738c05c750e667ff43d11552ad4183/docker/mosdepth) | [mosdepth@sha256:63f7a5d1a4a17b71e66d755d3301a951e50f6b63777d34dab3ee9e182fd7acb1](https://quay.io/repository/pacbio/mosdepth/manifest/sha256:63f7a5d1a4a17b71e66d755d3301a951e50f6b63777d34dab3ee9e182fd7acb1) |
-| sawfish | <ul><li>sawfish 0.12.10</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/b20d14fc62026b465970db1bd98d78d516014030/docker/sawfish) | [sawfish@sha256:ba4334987f6ae249b615f2c6788499950a513ac9cbd06156c39086bd3ed015f5](https://quay.io/repository/pacbio/sawfish/manifest/sha256:ba4334987f6ae249b615f2c6788499950a513ac9cbd06156c39086bd3ed015f5) |
+| sawfish | <ul><li>sawfish 1.0.2</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/d3d64bc7dd62a74369f4b7e9b2416b991691eedb/docker/sawfish) | [sawfish@sha256:f995aaf97f27b3a4bb9b0b453566ce0b797c126e06007a4fc95ffc7912d78d8e](https://quay.io/repository/pacbio/sawfish/manifest/sha256:f995aaf97f27b3a4bb9b0b453566ce0b797c126e06007a4fc95ffc7912d78d8e) |
 | trgt | <ul><li>trgt 2.0.0</li><li>`/opt/scripts/check_trgt_coverage.py` 0.1.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/9b84810374b3d3d89f466c2956e6deaaa611b5ee/docker/trgt) | [trgt@sha256:ff77823854be8ed63955fe361b53a3b8028d8e1a5e30cbd6f31ce07be62b2ed7](https://quay.io/repository/pacbio/trgt/manifest/sha256:ff77823854be8ed63955fe361b53a3b8028d8e1a5e30cbd6f31ce07be62b2ed7) |
 | hiphase | <ul><li>hiphase 1.5.0</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/69039c010ada793bab4d38a9bd17a30562b9b671/docker/hiphase) | [hiphase@sha256:353b4ffdae4281bdd5daf5a73ea3bb26ea742ef2c36e9980cb1f1ed524a07482](https://quay.io/repository/pacbio/hiphase/manifest/sha256:353b4ffdae4281bdd5daf5a73ea3bb26ea742ef2c36e9980cb1f1ed524a07482) |
 | hificnv | <ul><li>hificnv 1.0.1</li></ul> | [Dockerfile](https://github.com/PacificBiosciences/wdl-dockerfiles/tree/a58f8b44cf8fd09c39c90e07076dbb418188084d/docker/hificnv) | [hificnv@sha256:c4764a70c8c2028edb1cdb4352997269947c5076ddd1aeaeef6c5076c630304d](https://quay.io/repository/pacbio/hificnv/manifest/sha256:c4764a70c8c2028edb1cdb4352997269947c5076ddd1aeaeef6c5076c630304d) |

image_manifest.txt

@@ -7,7 +7,7 @@ quay.io/pacbio/pb-cpg-tools@sha256:afd5468a423fe089f1437d525fdc19c704296f7239587
 quay.io/pacbio/pbmm2@sha256:5f3f4d1f5dbea5cd4c388ee26b2fecbbb7dbcef449343633e039dca3d3725859
 quay.io/pacbio/pbstarphase@sha256:f7bbbe3814ef318a5ee89dca7263d1afda00da501642604c193629303a2ada3b
 quay.io/pacbio/pb_wdl_base@sha256:4b889a1f21a6a7fecf18820613cf610103966a93218de772caba126ab70a8e87
-quay.io/pacbio/sawfish@sha256:fcd5d091908322ddeb2c86b7217b7cfdef9a103944adb3e87c76d495eb3fea5b
+quay.io/pacbio/sawfish@sha256:f995aaf97f27b3a4bb9b0b453566ce0b797c126e06007a4fc95ffc7912d78d8e
 quay.io/pacbio/slivar@sha256:f71a27f756e2d69ec30949cbea97c54abbafde757562a98ef965f21a28aa8eaa
 quay.io/pacbio/svpack@sha256:628e9851e425ed8044a907d33de04043d1ef02d4d2b2667cf2e9a389bb011eba
 quay.io/pacbio/trgt@sha256:be7e6ef589a31f4de5d2ed4725dfb34b4b23cb9a440577b606e8f7bfee06526b

wdl-ci.config.json

@@ -2072,7 +2072,7 @@
       "tasks": {
         "sawfish_discover": {
           "key": "sawfish_discover",
-          "digest": "fhepxt5mh25uz4eg267h6al6nclhl7vl",
+          "digest": "bpppd3zrlqu4tpyls4fkrzq545ghyskz",
           "tests": [
             {
               "inputs": {
@@ -2140,7 +2140,7 @@
         },
         "sawfish_call": {
           "key": "sawfish_call",
-          "digest": "kjha4llh7xjs55xbkowbvfikvfnwtct4",
+          "digest": "jic2pwxzicg2ci3jz3agp43vep6mhrh6",
           "tests": [
             {
               "inputs": {