From 71b3292e6bc6589dd21713a8cbbed0481ad8d3dc Mon Sep 17 00:00:00 2001
From: William Rowell <wrowell@pacificbiosciences.com>
Date: Wed, 4 Feb 2026 10:41:15 -0800
Subject: [PATCH] feature: Added severus 1.6 container

1.6_build1: digest: sha256:da8667192eab08231e88fe33fb8688f52cfda7cc7f0064db9010dacdfbf60033
---
 docker/severus/Dockerfile | 23 +++++++++++++++++++++++
 docker/severus/build.env  | 12 ++++++++++++
 2 files changed, 35 insertions(+)
 create mode 100644 docker/severus/Dockerfile
 create mode 100644 docker/severus/build.env

diff --git a/docker/severus/Dockerfile b/docker/severus/Dockerfile
new file mode 100644
index 0000000..223ca79
--- /dev/null
+++ b/docker/severus/Dockerfile
@@ -0,0 +1,23 @@
+FROM mambaorg/micromamba:2.5.0
+LABEL maintainer="Zev Kronenberg <zkronenberg@pacb.com>"
+
+ARG IMAGE_NAME
+ENV IMAGE_NAME "${IMAGE_NAME}"
+ARG IMAGE_TAG
+ENV IMAGE_TAG "${IMAGE_TAG}"
+
+ARG SEVERUS_VERSION
+ARG HTSLIB_VERSION
+ARG BCFTOOLS_VERSION
+ARG SAMTOOLS_VERSION
+RUN micromamba create --yes \
+	--name severus \
+	--channel defaults \
+	--channel bioconda \
+	--channel conda-forge \
+	severus=${SEVERUS_VERSION} \
+	wget bcftools=${BCFTOOLS_VERSION} \
+	samtools=${SAMTOOLS_VERSION} \
+	htslib=${HTSLIB_VERSION} \
+	&& micromamba env export --name severus --explicit \
+	&& micromamba clean --all --yes
diff --git a/docker/severus/build.env b/docker/severus/build.env
new file mode 100644
index 0000000..4f1190a
--- /dev/null
+++ b/docker/severus/build.env
@@ -0,0 +1,12 @@
+# Image revision
+IMAGE_BUILD=1
+
+# Tool versions
+SEVERUS_VERSION=1.6
+HTSLIB_VERSION=1.20
+BCFTOOLS_VERSION=1.20
+SAMTOOLS_VERSION=1.20
+
+# Image info
+IMAGE_NAME=severus
+IMAGE_TAG=${SEVERUS_VERSION}_build${IMAGE_BUILD}
\ No newline at end of file