Merge branch 'develop' of https://github.com/PaddlePaddle/Paddle into refine_generate_proposals_op

Author: qingqing01

.gitignore

@@ -25,5 +25,6 @@ third_party/
 bazel-*
 third_party/
 
+build_*
 # clion workspace.
 cmake-build-*

CMakeLists.txt

@@ -72,6 +72,7 @@ option(WITH_INFERENCE    "Compile fluid inference library"              ON)
 option(WITH_INFERENCE_API_TEST   "Test fluid inference high-level api interface"  OFF)
 option(WITH_SYSTEM_BLAS   "Use system blas library"           OFF)
 option(PY_VERSION       "Compile PaddlePaddle with python3 support"     ${PY_VERSION})
+option(WITH_FAST_MATH   "Make use of fast math library, might affect the precision to some extent" ON)
 
 # PY_VERSION
 if(NOT PY_VERSION)
@@ -126,6 +127,9 @@ set(THIRD_PARTY_PATH "${CMAKE_BINARY_DIR}/third_party" CACHE STRING
 set(FLUID_INSTALL_DIR "${CMAKE_BINARY_DIR}/fluid_install_dir" CACHE STRING
   "A path setting fluid shared and static libraries")
 
+set(FLUID_INFERENCE_INSTALL_DIR "${CMAKE_BINARY_DIR}/fluid_inference_install_dir" CACHE STRING
+  "A path setting fluid inference shared and static libraries")
+
 if (WITH_C_API AND WITH_PYTHON)
   message(WARNING "It is suggest not embedded a python interpreter in Paddle "
     "when using C-API. It will give an unpredictable behavior when using a "

Dockerfile

@@ -24,6 +24,7 @@ COPY ./paddle/scripts/docker/root/ /root/
 
 RUN apt-get update && \
     apt-get install -y --allow-downgrades patchelf \
+    python3 python3-dev python3-pip \
     git python-pip python-dev python-opencv openssh-server bison \
     libnccl2=2.1.2-1+cuda8.0 libnccl-dev=2.1.2-1+cuda8.0 \
     wget unzip unrar tar xz-utils bzip2 gzip coreutils ntp \
@@ -70,24 +71,33 @@ RUN localedef -i en_US -f UTF-8 en_US.UTF-8
 # specify sphinx version as 1.5.6 and remove -U option for [pip install -U
 # sphinx-rtd-theme] since -U option will cause sphinx being updated to newest
 # version(1.7.1 for now), which causes building documentation failed.
-RUN easy_install -U pip && \
+RUN pip3 install -U wheel && \
+    pip3 install -U docopt PyYAML sphinx==1.5.6 && \
+    pip3 install sphinx-rtd-theme==0.1.9 recommonmark && \
+    easy_install -U pip && \
     pip install -U wheel && \
     pip install -U docopt PyYAML sphinx==1.5.6 && \
     pip install sphinx-rtd-theme==0.1.9 recommonmark
 
-RUN pip install pre-commit 'ipython==5.3.0' && \
+RUN pip3 install pre-commit 'ipython==5.3.0' && \
+    pip3 install 'ipykernel==4.6.0' 'jupyter==1.0.0' && \
+    pip3 install opencv-python && \
+    pip install pre-commit 'ipython==5.3.0' && \
     pip install 'ipykernel==4.6.0' 'jupyter==1.0.0' && \
     pip install opencv-python
 
 #For docstring checker
+RUN pip3 install pylint pytest astroid isort
 RUN pip install pylint pytest astroid isort LinkChecker
 
 COPY ./python/requirements.txt /root/
+RUN pip3 install -r /root/requirements.txt
 RUN pip install -r /root/requirements.txt
 
 # To fix https://github.com/PaddlePaddle/Paddle/issues/1954, we use
 # the solution in https://urllib3.readthedocs.io/en/latest/user-guide.html#ssl-py2
 RUN apt-get install -y libssl-dev libffi-dev
+RUN pip3 install certifi urllib3[secure]
 RUN pip install certifi urllib3[secure]
 
 

README.md

@@ -2,8 +2,8 @@
 
 
 [![Build Status](https://travis-ci.org/PaddlePaddle/Paddle.svg?branch=develop)](https://travis-ci.org/PaddlePaddle/Paddle)
-[![Documentation Status](https://img.shields.io/badge/docs-latest-brightgreen.svg?style=flat)](http://www.paddlepaddle.org/docs/develop/documentation/en/getstarted/index_en.html)
-[![Documentation Status](https://img.shields.io/badge/中文文档-最新-brightgreen.svg)](http://www.paddlepaddle.org/docs/develop/documentation/zh/getstarted/index_cn.html)
+[![Documentation Status](https://img.shields.io/badge/docs-latest-brightgreen.svg?style=flat)](http://paddlepaddle.org/documentation/docs/en/1.0/getstarted/index_en.html)
+[![Documentation Status](https://img.shields.io/badge/中文文档-最新-brightgreen.svg)](http://paddlepaddle.org/documentation/docs/zh/1.0/beginners_guide/index.html)
 [![Release](https://img.shields.io/github/release/PaddlePaddle/Paddle.svg)](https://github.com/PaddlePaddle/Paddle/releases)
 [![License](https://img.shields.io/badge/license-Apache%202-blue.svg)](LICENSE)
 
@@ -19,17 +19,17 @@ Our vision is to enable deep learning for everyone via PaddlePaddle.
 Please refer to our [release announcement](https://github.com/PaddlePaddle/Paddle/releases) to track the latest feature of PaddlePaddle.
 
 
-### Latest PaddlePaddle Release: [Fluid 0.15.0](https://github.com/PaddlePaddle/Paddle/tree/v0.15.0)
+### Latest PaddlePaddle Release: [Fluid 1.0.1](https://github.com/PaddlePaddle/Paddle/tree/release/1.0.0)
 ### Install Latest Stable Release:
 ```
 # Linux CPU
 pip install paddlepaddle
 # Linux GPU cuda9cudnn7
 pip install paddlepaddle-gpu
 # Linux GPU cuda8cudnn7
-pip install paddlepaddle-gpu==0.15.0.post87
+pip install paddlepaddle-gpu==1.0.1.post87
 # Linux GPU cuda8cudnn5
-pip install paddlepaddle-gpu==0.15.0.post85
+pip install paddlepaddle-gpu==1.0.1.post85
 
 # For installation on other platform, refer to http://paddlepaddle.org/
 ```
@@ -76,26 +76,26 @@ pip install paddlepaddle-gpu==0.15.0.post85
 
 ## Installation
 
-It is recommended to read [this doc](http://paddlepaddle.org/documentation/docs/zh/0.15.0/new_docs/beginners_guide/install/install_doc.html) on our website.
+It is recommended to read [this doc](http://paddlepaddle.org/documentation/docs/zh/1.0/beginners_guide/index.html) on our website.
 
 ## Documentation
 
-We provide [English](http://paddlepaddle.org/documentation/docs/en/0.15.0/getstarted/index_en.html) and
-[Chinese](http://paddlepaddle.org/documentation/docs/zh/0.15.0/new_docs/beginners_guide/index.html) documentation.
+We provide [English](http://paddlepaddle.org/documentation/docs/en/1.0.0/getstarted/index_en.html) and
+[Chinese](http://paddlepaddle.org/documentation/docs/zh/1.0/beginners_guide/index.html) documentation.
 
 - [Deep Learning 101](https://github.com/PaddlePaddle/book)
 
   You might want to start from this online interactive book that can run in a Jupyter Notebook.
 
-- [Distributed Training](http://paddlepaddle.org/documentation/docs/zh/0.15.0/new_docs/user_guides/howto/training/cluster_howto.html)
+- [Distributed Training](http://paddlepaddle.org/documentation/docs/zh/1.0/user_guides/howto/training/cluster_howto.html)
 
   You can run distributed training jobs on MPI clusters.
 
-- [Python API](http://paddlepaddle.org/documentation/api/zh/0.15.0/fluid.html)
+- [Python API](http://paddlepaddle.org/documentation/api/zh/1.0/fluid.html)
 
    Our new API enables much shorter programs.
 
-- [How to Contribute](http://paddlepaddle.org/documentation/docs/zh/0.15.0/new_docs/advanced_usage/development/contribute_to_paddle.html)
+- [How to Contribute](http://paddlepaddle.org/documentation/docs/zh/1.0/advanced_usage/development/contribute_to_paddle.html)
 
    We appreciate your contributions!
 

benchmark/fluid/run.sh

@@ -40,7 +40,7 @@ set(OPENBLAS_LIB_SEARCH_PATHS
         /usr/local/opt/openblas/lib)
 
 find_path(OPENBLAS_INC_DIR NAMES cblas.h
-  PATHS ${OPENBLAS_INCLUDE_SEARCH_PATHS})
+  PATHS ${OPENBLAS_INCLUDE_SEARCH_PATHS} NO_DEFAULT_PATH)
 find_path(OPENBLAS_LAPACKE_INC_DIR NAMES lapacke.h
   PATHS ${OPENBLAS_INCLUDE_SEARCH_PATHS})
 find_library(OPENBLAS_LIB NAMES openblas

cmake/cblas.cmake

@@ -175,7 +175,10 @@ list(APPEND CUDA_NVCC_FLAGS "-std=c++11")
 list(APPEND CUDA_NVCC_FLAGS "-Xcompiler -fPIC")
 endif(NOT WIN32)
 
-list(APPEND CUDA_NVCC_FLAGS "--use_fast_math")
+if(WITH_FAST_MATH)
+  # Make use of fast math library. https://docs.nvidia.com/cuda/cuda-compiler-driver-nvcc/index.html
+  list(APPEND CUDA_NVCC_FLAGS "--use_fast_math")
+endif()
 # in cuda9, suppress cuda warning on eigen 
 list(APPEND CUDA_NVCC_FLAGS "-w")
 # Set :expt-relaxed-constexpr to suppress Eigen warnings

cmake/cuda.cmake

@@ -3,6 +3,14 @@ INCLUDE(ExternalProject)
 SET(EIGEN_SOURCE_DIR ${THIRD_PARTY_PATH}/eigen3)
 SET(EIGEN_INCLUDE_DIR ${EIGEN_SOURCE_DIR}/src/extern_eigen3)
 INCLUDE_DIRECTORIES(${EIGEN_INCLUDE_DIR})
+if(NOT WITH_FAST_MATH)
+  # EIGEN_FAST_MATH: https://eigen.tuxfamily.org/dox/TopicPreprocessorDirectives.html
+  # enables some optimizations which might affect the accuracy of the result. 
+  # This currently enables the SSE vectorization of sin() and cos(), 
+  # and speedups sqrt() for single precision.
+  # Defined to 1 by default. Define it to 0 to disable.
+  add_definitions(-DEIGEN_FAST_MATH=0)
+endif()
 
 if(WITH_AMD_GPU)
     ExternalProject_Add(

cmake/external/eigen.cmake

@@ -27,7 +27,7 @@ IF(NOT ${CBLAS_FOUND})
 
     SET(CBLAS_SOURCES_DIR ${THIRD_PARTY_PATH}/openblas)
     SET(CBLAS_INSTALL_DIR ${THIRD_PARTY_PATH}/install/openblas)
-    SET(CBLAS_INCLUDE_DIR "${CBLAS_INSTALL_DIR}/include" CACHE PATH "openblas include directory." FORCE)
+    SET(CBLAS_INC_DIR "${CBLAS_INSTALL_DIR}/include" CACHE PATH "openblas include directory." FORCE)
 
     SET(CBLAS_LIBRARIES
         "${CBLAS_INSTALL_DIR}/lib/${CMAKE_STATIC_LIBRARY_PREFIX}openblas${CMAKE_STATIC_LIBRARY_SUFFIX}"
@@ -96,7 +96,7 @@ IF(NOT ${CBLAS_FOUND})
     ENDIF(NOT WIN32)
     SET(CBLAS_PROVIDER openblas)
     IF(WITH_C_API)
-        INSTALL(DIRECTORY ${CBLAS_INCLUDE_DIR} DESTINATION third_party/openblas)
+        INSTALL(DIRECTORY ${CBLAS_INC_DIR} DESTINATION third_party/openblas)
         # Because libopenblas.a is a symbolic link of another library, thus need to
         # install the whole directory.
         IF(ANDROID)
@@ -117,8 +117,8 @@ IF(NOT ${CBLAS_FOUND})
 ENDIF(NOT ${CBLAS_FOUND})
 
 MESSAGE(STATUS "BLAS library: ${CBLAS_LIBRARIES}")
-MESSAGE(STATUS "BLAS Include: ${CBLAS_INCLUDE_DIR}")
-INCLUDE_DIRECTORIES(${CBLAS_INCLUDE_DIR})
+MESSAGE(STATUS "BLAS Include: ${CBLAS_INC_DIR}")
+INCLUDE_DIRECTORIES(${CBLAS_INC_DIR})
 
 # FIXME(gangliao): generate cblas target to track all high performance
 # linear algebra libraries for cc_library(xxx SRCS xxx.c DEPS cblas)

cmake/external/openblas.cmake

@@ -157,6 +157,8 @@ if (APPLE)
         # On Mac OS X build fat binaries with x86_64 architectures by default.
         set (CMAKE_OSX_ARCHITECTURES "x86_64" CACHE STRING "Build architectures for OSX" FORCE)
     endif()
+    # On Mac OS X register class specifier is deprecated and will cause warning error on latest clang 10.0
+    set (COMMON_FLAGS -Wno-deprecated-register)
 endif(APPLE)
 
 if(LINUX)