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HelixFold install fails on pip install -r requirements.txt #374

@DavidBJaffe

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@DavidBJaffe

Hi, I attempted to install HelixFold from https://github.com/PaddlePaddle/PaddleHelix/tree/dev/apps/protein_folding/helixfold3, doing exactly this:

git clone https://github.com/PaddlePaddle/PaddleHelix
cd PaddleHelix
cd apps/protein_folding/helixfold
conda create -n msa_env -c conda-forge python=3.9 -y
conda activate msa_env
conda install -c bioconda aria2 hmmer==3.3.2 kalign2==2.04 hhsuite==3.3.0 -n msa_env -y
conda create -n helixfold -c conda-forge python=3.10 -y
conda activate helixfold
pip install paddlepaddle-gpu==3.1.0 -i https://www.paddlepaddle.org.cn/packages/stable/cu126/
pip install -r requirements.txt

The last step fails with the error:

WARNING: Requirement './paddlepaddle_gpu-0.0.0.post116-cp37-cp37m-linux_x86_64.whl' looks like a filename, but the file does not exist
ERROR: paddlepaddle_gpu-0.0.0.post116-cp37-cp37m-linux_x86_64.whl is not a supported wheel on this platform.

Can you please suggest how to make this work?

Thanks very much,

David

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