some cleanup

Author: pancetta

pySDC/projects/Performance/howto_scorep.txt

@@ -1,34 +1,33 @@
-module load Intel ParaStationMPI SciPy-Stack petsc4py mpi4py FFTW JUBE
-module load Scalasca CubeLib CubeGUI Vampir PAPI
-module unload Score-P
+Required modules on JURECA:
 
-NICHT Score-P LADEN!
+    module load Intel ParaStationMPI SciPy-Stack petsc4py mpi4py FFTW
+    module load Scalasca CubeLib CubeGUI Vampir PAPI
+    module unload Score-P
 
 
-Bindings bauen:
+Build bindings (unless fixed in the official release/installed version):
 
-cd $PROJECT/tools/scorep_binding_python-master
-export PATH=/p/project/ccstma/scorep/6.0-trunk-mrobefix_intel-parastation-papi/bin:$PATH
-pip install --user .
+    cd $PROJECT/tools/scorep_binding_python-master
+    export PATH=/p/project/ccstma/scorep/6.0-trunk-mrobefix_intel-impi-papi/bin:$PATH
+    pip install --user .
 
 
-Im Jobscript:
+In your jobscript:
 
 export PATH=/p/project/ccstma/scorep/6.0-trunk-mrobefix_intel-parastation-papi/bin:$PATH
-
 export SCOREP_PROFILING_MAX_CALLPATH_DEPTH=90
 export SCOREP_ENABLE_TRACING=1
 export SCOREP_TOTAL_MEMORY=256M
-export SCOREP_EXPERIMENT_DIRECTORY=mydir
+export SCOREP_EXPERIMENT_DIRECTORY=data/mydir
 
-srun python -m scorep --mpi pySDC_with_PETSc.py -n N
+srun python -m scorep --mpi run_simple_forcing_benchmark.py -n N
 srun scout.mpi --time-correct $SCOREP_EXPERIMENT_DIRECTORY/traces.otf2
 
 
-Ablauf:
+Workflow:
+* Activate scorep-controller in the main Python file
+* Run job without tracing, only do profiling (export SCOREP_ENABLE_TRACING=0)
+* scorep-score -c N $SCOREP_EXPERIMENT_DIRECTORY/profile.cubex
+* Check memory requirements, adapt in job script (export SCOREP_TOTAL_MEMORY=XXX) and restart job with tracing (export SCOREP_ENABLE_TRACING=1)
+* square $SCOREP_EXPERIMENT_DIRECTORY
 
-* Starte Job ohne Tracing (export SCOREP_ENABLE_TRACING=0), nur Profiling
-* scorep-score -c N <SCOREP_EXPERIMENT_DIRECTORY>/profile.cubex
-* Dann check memory requirements, restart Job mit Tracing (export SCOREP_ENABLE_TRACING=1)
-* scout schon im Jobscript?
-* square <SCOREP_EXPERIMENT_DIRECTORY>

pySDC/projects/Performance/run_simple_forcing_benchmark.py

@@ -83,7 +83,7 @@ def run_simulation(name=None, nprocs_space=None):
     controller_params = dict()
     controller_params['logger_level'] = 30 if space_rank == 0 else 99  # set level depending on rank
     controller_params['predict_type'] = 'fine_only'
-    controller_params['hook_class'] = dump  # activate to get data output at each step
+    # controller_params['hook_class'] = dump  # activate to get data output at each step
 
     # fill description dictionary for easy step instantiation
     description = dict()

pySDC/projects/Performance/vampir_regions_pref_v2.vsettings

@@ -73,7 +73,7 @@ def plot_data(name=''):
         plt_helper.plt.yticks(range(-2, 3))
         cbar = plt_helper.plt.colorbar()
         cbar.set_label('concentration')
-        plt_helper.plt.title(f"Time: {obj['time']:6.4f}")
+        # plt_helper.plt.title(f"Time: {obj['time']:6.4f}")
 
         # save plot, beautify
         fname = f'data/{name}_{index}'