checkpoint exceptions

Author: benclifford

parsl/dataflow/memoization.py

@@ -11,6 +11,7 @@
 import typeguard
 
 from parsl.dataflow.errors import BadCheckpoint
+from parsl.dataflow.futures import AppFuture
 from parsl.dataflow.taskrecord import TaskRecord
 
 if TYPE_CHECKING:
@@ -339,8 +340,12 @@ def _load_checkpoints(self, checkpointDirs: Sequence[str]) -> Dict[str, Future[A
                             data = pickle.load(f)
                             # Copy and hash only the input attributes
                             memo_fu: Future = Future()
-                            assert data['exception'] is None
-                            memo_fu.set_result(data['result'])
+
+                            if data['exception'] is None:
+                                memo_fu.set_result(data['result'])
+                            else:
+                                assert data['result'] is None
+                                memo_fu.set_exception(data['exception'])
                             memo_lookup_table[data['hash']] = memo_fu
 
                         except EOFError:
@@ -414,17 +419,22 @@ def checkpoint(self, tasks: Sequence[TaskRecord]) -> None:
 
                     app_fu = task_record['app_fu']
 
-                    if app_fu.done() and app_fu.exception() is None:
+                    if app_fu.done() and self.filter_for_checkpoint(app_fu):
+
                         hashsum = task_record['hashsum']
                         if not hashsum:
                             continue
-                        t = {'hash': hashsum, 'exception': None, 'result': app_fu.result()}
+
+                        if app_fu.exception() is None:
+                            t = {'hash': hashsum, 'exception': None, 'result': app_fu.result()}
+                        else:
+                            t = {'hash': hashsum, 'exception': app_fu.exception(), 'result': None}
 
                         # We are using pickle here since pickle dumps to a file in 'ab'
                         # mode behave like a incremental log.
                         pickle.dump(t, f)
                         count += 1
-                        logger.debug("Task {} checkpointed".format(task_id))
+                        logger.debug("Task {} checkpointed as result".format(task_id))
 
             self.checkpointed_tasks += count
 
@@ -435,3 +445,7 @@ def checkpoint(self, tasks: Sequence[TaskRecord]) -> None:
                     logger.debug("No tasks checkpointed in this pass.")
             else:
                 logger.info("Done checkpointing {} tasks".format(count))
+
+    def filter_for_checkpoint(self, app_fu: AppFuture) -> bool:
+        """Overridable method to decide if an entry should be checkpointed"""
+        return app_fu.exception() is None

parsl/tests/test_checkpointing/test_python_checkpoint_exceptions.py

@@ -0,0 +1,66 @@
+import contextlib
+import os
+
+import pytest
+
+import parsl
+from parsl import python_app
+from parsl.config import Config
+from parsl.dataflow.memoization import BasicMemoizer
+from parsl.executors.threads import ThreadPoolExecutor
+
+
+class CheckpointExceptionsMemoizer(BasicMemoizer):
+    def filter_for_checkpoint(self, app_fu):
+        # checkpoint everything, rather than selecting only futures with
+        # results, not exceptions.
+
+        # task record is available from app_fu.task_record
+        assert app_fu.task_record is not None
+
+        return True
+
+
+def fresh_config():
+    return Config(
+        memoizer=CheckpointExceptionsMemoizer(),
+        executors=[
+            ThreadPoolExecutor(
+                label='local_threads_checkpoint',
+            )
+        ]
+    )
+
+
+@contextlib.contextmanager
+def parsl_configured(run_dir, **kw):
+    c = fresh_config()
+    c.run_dir = run_dir
+    for config_attr, config_val in kw.items():
+        setattr(c, config_attr, config_val)
+    dfk = parsl.load(c)
+    for ex in dfk.executors.values():
+        ex.working_dir = run_dir
+    yield dfk
+
+    parsl.dfk().cleanup()
+
+
+@python_app(cache=True)
+def uuid_app():
+    import uuid
+    raise RuntimeError(str(uuid.uuid4()))
+
+
+@pytest.mark.local
+def test_loading_checkpoint(tmpd_cwd):
+    """Load memoization table from previous checkpoint
+    """
+    with parsl_configured(tmpd_cwd, checkpoint_mode="task_exit"):
+        checkpoint_files = [os.path.join(parsl.dfk().run_dir, "checkpoint")]
+        result = uuid_app().exception()
+
+    with parsl_configured(tmpd_cwd, checkpoint_files=checkpoint_files):
+        relaunched = uuid_app().exception()
+
+    assert result.args == relaunched.args, "Expected following call to uuid_app to return cached uuid in exception"