shorter simulation times on test harness for redBloodCell cases

danielque · danielque · commit 13e59892160b · 2023-02-15T10:19:24.000+01:00
with the original simulation time the case gets to long/large for
reasonable testing ...
diff --git a/tutorials/cfdemSolverIBContinuousForcing/redBloodCellPoiseuilleFlow/CFD/system/controlDict_test b/tutorials/cfdemSolverIBContinuousForcing/redBloodCellPoiseuilleFlow/CFD/system/controlDict_test
@@ -0,0 +1,121 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     | Website:  https://openfoam.org
+    \\  /    A nd           | Version:  6
+     \\/     M anipulation  |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      controlDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+application     pisoFoam;
+
+startFrom       latestTime;
+
+startTime       0;
+
+stopAt          endTime;
+
+endTime         50000;
+
+deltaT          10;
+
+writeControl    adjustableRunTime;
+
+writeInterval   10000;
+
+purgeWrite      0;
+
+writeFormat     ascii;
+
+writePrecision  6;
+
+writeCompression uncompressed;
+
+timeFormat      general;
+
+timePrecision   6;
+
+runTimeModifiable yes;
+
+adjustTimeStep  no;
+
+maxCo           1.0;
+
+maxDeltaT       10;
+
+
+// ************************************************************************* //
+DimensionedConstants
+{
+    unitSet	micro; // SI;
+
+    SICoeffs
+    {
+        universal
+        {
+            c               c [ 0 1 -1 0 0 0 0 ] 2.99792e+08;
+            G               G [ -1 3 -2 0 0 0 0 ] 6.67429e-11;
+            h               h [ 1 2 -1 0 0 0 0 ] 6.62607e-34;
+        }
+        electromagnetic
+        {
+            e               e [ 0 0 1 0 0 1 0 ] 1.60218e-19;
+        }
+        atomic
+        {
+            me              me [ 1 0 0 0 0 0 0 ] 9.10938e-31;
+            mp              mp [ 1 0 0 0 0 0 0 ] 1.67262e-27;
+        }
+        physicoChemical
+        {
+            mu              mu [ 1 0 0 0 0 0 0 ] 1.66054e-27;
+            k               k [ 1 2 -2 -1 0 0 0 ] 1.38065e-23;
+        }
+        standard
+        {
+            //- Standard pressure [Pa]
+            Pstd            Pstd [ 1 -1 -2 0 0 0 0 ] 100000;
+            //- Standard temperature [degK]
+            Tstd            Tstd [ 0 0 0 1 0 0 0 ] 298.15;
+        }
+    }
+
+    microCoeffs
+    {
+        universal
+        {
+            c               c [ 0 1 -1 0 0 0 0 ] 2.99792e+08;
+            G               G [ -1 3 -2 0 0 0 0 ] 6.67429e-20;
+            h               h [ 1 2 -1 0 0 0 0 ] 6.62607e-13;
+        }
+        electromagnetic
+        {
+            e               e [ 0 0 1 0 0 1 0 ] 1.60218e-19;
+        }
+        atomic
+        {
+            me              me [ 1 0 0 0 0 0 0 ] 9.10938e-16;
+            mp              mp [ 1 0 0 0 0 0 0 ] 1.67262e-12;
+        }
+        physicoChemical
+        {
+            mu              mu [ 1 0 0 0 0 0 0 ] 1.66054e-12;
+            k               k [ 1 2 -2 -1 0 0 0 ] 1.38065e-23;
+        }
+        standard
+        {
+            //- Standard pressure [Pa]
+            Pstd            Pstd [ 1 -1 -2 0 0 0 0 ] 100000;
+            //- Standard temperature [degK]
+            Tstd            Tstd [ 0 0 0 1 0 0 0 ] 298.15;
+        }
+    }
+}
diff --git a/tutorials/cfdemSolverIBContinuousForcing/redBloodCellPoiseuilleFlow/prerun.sh b/tutorials/cfdemSolverIBContinuousForcing/redBloodCellPoiseuilleFlow/prerun.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#- define variables
+casePath="$(dirname "$(readlink -f ${BASH_SOURCE[0]})")"
+
+# check if mesh was built
+if [ -f "$casePath/CFD/constant/polyMesh/boundary" ]; then
+    echo "mesh was built before - using old mesh"
+else
+    echo "mesh needs to be built"
+    cd $casePath/CFD
+    blockMesh
+fi
+
+# adapt settings for test harness run
+cp $casePath/CFD/system/controlDict_test $casePath/CFD/system/controlDict
diff --git a/tutorials/cfdemSolverIBContinuousForcing/redBloodCellPoiseuilleFlow/run.config b/tutorials/cfdemSolverIBContinuousForcing/redBloodCellPoiseuilleFlow/run.config
@@ -12,6 +12,7 @@
       "solver" : "cfdemSolverIBContinuousForcing",
       "type" : "CFDEMcoupling/mpi",
       "nprocs" : 2,
+      "pre_scripts" : ["prerun.sh"],
       "data" : {
           "series" : [
             {"name" : "position", "file" : "particle_position.txt", "columns" : ["t", "x1", "y1", "z1", "x2", "y2", "z2", "x3", "y3", "z3", "x4", "y4", "z4", "x5", "y5", "z5", "x6", "y6", "z6", "x7", "y7", "z7", "x8", "y8", "z8", "x9", "y9", "z9", "x10", "y10", "z10"]}
diff --git a/tutorials/cfdemSolverIBContinuousForcing/redBloodCellShearFlow/CFD/system/controlDict_test b/tutorials/cfdemSolverIBContinuousForcing/redBloodCellShearFlow/CFD/system/controlDict_test
@@ -0,0 +1,121 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     | Website:  https://openfoam.org
+    \\  /    A nd           | Version:  6
+     \\/     M anipulation  |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      controlDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+application     pisoFoam;
+
+startFrom       latestTime;
+
+startTime       0;
+
+stopAt          endTime;
+
+endTime         5000;
+
+deltaT          1;
+
+writeControl    adjustableRunTime;
+
+writeInterval   100;
+
+purgeWrite      0;
+
+writeFormat     ascii;
+
+writePrecision  6;
+
+writeCompression uncompressed;
+
+timeFormat      general;
+
+timePrecision   6;
+
+runTimeModifiable yes;
+
+adjustTimeStep  no;
+
+maxCo           1.0;
+
+maxDeltaT       10;
+
+
+// ************************************************************************* //
+DimensionedConstants
+{
+    unitSet	micro; // SI;
+
+    SICoeffs
+    {
+        universal
+        {
+            c               c [ 0 1 -1 0 0 0 0 ] 2.99792e+08;
+            G               G [ -1 3 -2 0 0 0 0 ] 6.67429e-11;
+            h               h [ 1 2 -1 0 0 0 0 ] 6.62607e-34;
+        }
+        electromagnetic
+        {
+            e               e [ 0 0 1 0 0 1 0 ] 1.60218e-19;
+        }
+        atomic
+        {
+            me              me [ 1 0 0 0 0 0 0 ] 9.10938e-31;
+            mp              mp [ 1 0 0 0 0 0 0 ] 1.67262e-27;
+        }
+        physicoChemical
+        {
+            mu              mu [ 1 0 0 0 0 0 0 ] 1.66054e-27;
+            k               k [ 1 2 -2 -1 0 0 0 ] 1.38065e-23;
+        }
+        standard
+        {
+            //- Standard pressure [Pa]
+            Pstd            Pstd [ 1 -1 -2 0 0 0 0 ] 100000;
+            //- Standard temperature [degK]
+            Tstd            Tstd [ 0 0 0 1 0 0 0 ] 298.15;
+        }
+    }
+
+    microCoeffs
+    {
+        universal
+        {
+            c               c [ 0 1 -1 0 0 0 0 ] 2.99792e+08;
+            G               G [ -1 3 -2 0 0 0 0 ] 6.67429e-20;
+            h               h [ 1 2 -1 0 0 0 0 ] 6.62607e-13;
+        }
+        electromagnetic
+        {
+            e               e [ 0 0 1 0 0 1 0 ] 1.60218e-19;
+        }
+        atomic
+        {
+            me              me [ 1 0 0 0 0 0 0 ] 9.10938e-16;
+            mp              mp [ 1 0 0 0 0 0 0 ] 1.67262e-12;
+        }
+        physicoChemical
+        {
+            mu              mu [ 1 0 0 0 0 0 0 ] 1.66054e-12;
+            k               k [ 1 2 -2 -1 0 0 0 ] 1.38065e-23;
+        }
+        standard
+        {
+            //- Standard pressure [Pa]
+            Pstd            Pstd [ 1 -1 -2 0 0 0 0 ] 100000;
+            //- Standard temperature [degK]
+            Tstd            Tstd [ 0 0 0 1 0 0 0 ] 298.15;
+        }
+    }
+}
diff --git a/tutorials/cfdemSolverIBContinuousForcing/redBloodCellShearFlow/prerun.sh b/tutorials/cfdemSolverIBContinuousForcing/redBloodCellShearFlow/prerun.sh
@@ -0,0 +1,16 @@
+#!/bin/bash
+
+#- define variables
+casePath="$(dirname "$(readlink -f ${BASH_SOURCE[0]})")"
+
+# check if mesh was built
+if [ -f "$casePath/CFD/constant/polyMesh/boundary" ]; then
+    echo "mesh was built before - using old mesh"
+else
+    echo "mesh needs to be built"
+    cd $casePath/CFD
+    blockMesh
+fi
+
+# adapt settings for test harness run
+cp $casePath/CFD/system/controlDict_test $casePath/CFD/system/controlDict
diff --git a/tutorials/cfdemSolverIBContinuousForcing/redBloodCellShearFlow/run.config b/tutorials/cfdemSolverIBContinuousForcing/redBloodCellShearFlow/run.config
@@ -12,6 +12,7 @@
       "solver" : "cfdemSolverIBContinuousForcing",
       "type" : "CFDEMcoupling/mpi",
       "nprocs" : 2,
+      "pre_scripts" : ["prerun.sh"],
       "data" : {
           "series" : [
             {"name" : "position", "file" : "particle_position.txt", "columns" : ["t", "x1", "y1", "z1", "x2", "y2", "z2", "x3", "y3", "z3", "x4", "y4", "z4", "x5", "y5", "z5", "x6", "y6", "z6", "x7", "y7", "z7", "x8", "y8", "z8", "x9", "y9", "z9", "x10", "y10", "z10"]}
