Add rule to compile extracted VCF fields #497
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| name: Install | |
| on: [push, pull_request] | |
| jobs: | |
| Install: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| channel-priority: strict | |
| activate-environment: snakemake | |
| auto-activate-base: false | |
| environment-file: .test/environment_v7.yaml | |
| - name: Create environments | |
| shell: bash -el {0} | |
| run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml --conda-create-envs-only --use-conda -c1 --conda-frontend conda | |
| Dry_run: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| channel-priority: strict | |
| activate-environment: snakemake | |
| auto-activate-base: false | |
| environment-file: .test/environment_v7.yaml | |
| - name: Dry run | |
| shell: bash -el {0} | |
| run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml --dry-run |