Add --keep-going to tests

Author: ahmig

.github/workflows/test_apptainer.yml

@@ -26,7 +26,7 @@ jobs:
           environment-file: .test/environment_apptainer.yaml
       - name: Run test pipeline
         shell: bash -el {0}
-        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml -c1 --sdm apptainer conda
+        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml -c1 --sdm apptainer conda --keep-going
       - name: Pack logs
         if: success() || failure()
         shell: bash -el {0}

.github/workflows/test_v7.yml

@@ -26,7 +26,7 @@ jobs:
           environment-file: .test/environment_v7.yaml
       - name: Run test pipeline
         shell: bash -el {0}
-        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml --use-conda -c1 --conda-frontend conda
+        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml --use-conda -c1 --conda-frontend conda --keep-going
       - name: Pack logs
         if: success() || failure()
         shell: bash -el {0}

.github/workflows/test_v8.yml

@@ -26,7 +26,7 @@ jobs:
           environment-file: .test/environment_v8.yaml
       - name: Run test pipeline
         shell: bash -el {0}
-        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml --use-conda -c1 --conda-frontend conda
+        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml --use-conda -c1 --conda-frontend conda --keep-going
       - name: Pack logs
         if: success() || failure()
         shell: bash -el {0}

.github/workflows/test_v9.yml

@@ -26,7 +26,7 @@ jobs:
           environment-file: .test/environment_v9.yaml
       - name: Run test pipeline
         shell: bash -el {0}
-        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml -c1 --sdm conda
+        run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml -c1 --sdm conda --keep-going
       - name: Pack logs
         if: success() || failure()
         shell: bash -el {0}