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lines changed Original file line number Diff line number Diff line change @@ -47,8 +47,7 @@ This information may also be provided through the `--config` parameter.
4747# # Automated construction of a context dataset
4848
4949Setting the `CONTEXT_FASTA` parameter to `null` (default) will enable
50- the automatic download of sequences from the GISAID SARS-CoV-2 database
51- (see [the following section](/config/README.md#context-checkpoints) for further details).
50+ the automatic download of sequences from the GISAID SARS-CoV-2 database.
5251An unset parameter has the same effect.
5352To enable this, you must also [sign up to the GISAID platform](https://gisaid.org/register/)
5453and provide your credentials by creating and filling an additional configuration
@@ -77,7 +76,7 @@ Then, a series of checkpoint steps are executed for quality assurance:
7776
7877The workflow will continue its execution until completion if the obtained
7978context dataset passes these checkpoints. Otherwise, the execution will be
80- terminated and, to continue the analysis. An external context dataset must
79+ terminated and, to continue the analysis, an external context dataset must
8180be provided through the `CONTEXT_FASTA` parameter. This can be done
8281by editing [targets.yaml](/config/targets.yaml) or via the command line :
8382
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