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chore: update new VAF environment in Dockerfile
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Dockerfile

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FROM condaforge/miniforge3:latest
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LABEL io.github.snakemake.containerized="true"
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LABEL io.github.snakemake.conda_env_hash="7071b22b1161190c06be3ac061ab0019a1a8d3038532c9134e070a3875414ef5"
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LABEL io.github.snakemake.conda_env_hash="a74592ad8bd4ec05cb4d3f2bde91dd12ba674df1828dc48cc7e2c39b95aed05c"
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# Step 2: Retrieve conda environments
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@@ -149,15 +149,16 @@ COPY workflow/envs/snpeff.yaml /conda-envs/0adafb79cb1bec58ef4c77bf4cca4f95/envi
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# Conda environment:
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# source: workflow/envs/var_calling.yaml
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# prefix: /conda-envs/5150d0f0a91d7f7a789a06f453d63479
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# prefix: /conda-envs/81e46c677a6cc0618c93963d57d17d3f
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# channels:
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# - conda-forge
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# - bioconda
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# dependencies:
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# - ivar==1.4.2
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# - samtools==1.17
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RUN mkdir -p /conda-envs/5150d0f0a91d7f7a789a06f453d63479
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COPY workflow/envs/var_calling.yaml /conda-envs/5150d0f0a91d7f7a789a06f453d63479/environment.yaml
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# - bcftools==1.17
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RUN mkdir -p /conda-envs/81e46c677a6cc0618c93963d57d17d3f
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COPY workflow/envs/var_calling.yaml /conda-envs/81e46c677a6cc0618c93963d57d17d3f/environment.yaml
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# Step 3: Generate conda environments
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@@ -172,7 +173,7 @@ RUN conda env create --prefix /conda-envs/9c24a867826615972cc288081976e7fc --fil
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conda env create --prefix /conda-envs/96f3c1cec4b3ce5d72f708992272e9c1 --file /conda-envs/96f3c1cec4b3ce5d72f708992272e9c1/environment.yaml && \
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conda env create --prefix /conda-envs/8ad6cdcf265d30289788da99d5bf9fff --file /conda-envs/8ad6cdcf265d30289788da99d5bf9fff/environment.yaml && \
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conda env create --prefix /conda-envs/0adafb79cb1bec58ef4c77bf4cca4f95 --file /conda-envs/0adafb79cb1bec58ef4c77bf4cca4f95/environment.yaml && \
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conda env create --prefix /conda-envs/5150d0f0a91d7f7a789a06f453d63479 --file /conda-envs/5150d0f0a91d7f7a789a06f453d63479/environment.yaml && \
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conda env create --prefix /conda-envs/81e46c677a6cc0618c93963d57d17d3f --file /conda-envs/81e46c677a6cc0618c93963d57d17d3f/environment.yaml && \
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conda clean --all -y
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# Step 4: Run post-deploy scripts

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