feat: remove pangolin module from rule core

Author: ahmig

.test/Snakefile

@@ -14,6 +14,7 @@ __version__ = "1.3.0"
 include: "../workflow/core.smk"
 include: "../workflow/rules/demix.smk"
 include: "../workflow/rules/context.smk"
+include: "../workflow/rules/pangolin.smk"
 include: "../workflow/rules/report.smk"
 
 rule all:

workflow/Snakefile

@@ -17,6 +17,7 @@ configfile: "config/targets.yaml"
 include: "core.smk"
 include: "rules/context.smk"
 include: "rules/demix.smk"
+include: "rules/pangolin.smk"
 include: "rules/report.smk"
 
 rule all:

workflow/core.smk

@@ -17,6 +17,5 @@ include: "rules/fetch.smk"
 include: "rules/fasta.smk"
 include: "rules/asr.smk"
 include: "rules/vaf.smk"
-include: "rules/pangolin.smk"
 include: "rules/distances.smk"
 include: "rules/evolution.smk"