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Add conda deployment method to action
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.github/workflows/test_apptainer.yml

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@@ -26,7 +26,7 @@ jobs:
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environment-file: .test/environment_apptainer.yaml
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- name: Run test pipeline
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shell: bash -el {0}
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run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml -c1 --sdm apptainer
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run: snakemake --snakefile .test/Snakefile --configfile config/config.yaml .test/targets.yaml -c1 --sdm apptainer conda
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- name: Pack logs
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if: success() || failure()
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shell: bash -el {0}

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