Fix post-deploy installation in Dockerfile

Author: ahmig

Dockerfile

@@ -63,6 +63,7 @@ COPY workflow/envs/freyja.yaml /conda-envs/bb4c5f3a509433cc08861582fab4a705/envi
 #     - r-logger==0.2.2
 RUN mkdir -p /conda-envs/3fad3c9cdfa40bee9404f6a2e8fda69f
 COPY workflow/envs/gisaidr.yaml /conda-envs/3fad3c9cdfa40bee9404f6a2e8fda69f/environment.yaml
+COPY workflow/envs/gisaidr.post-deploy.sh /conda-envs/3fad3c9cdfa40bee9404f6a2e8fda69f/post-deploy.sh
 
 # Conda environment:
 #   source: workflow/envs/iqtree.yaml
@@ -176,8 +177,7 @@ RUN conda env create --prefix /conda-envs/9c24a867826615972cc288081976e7fc --fil
 
 # Step 4: Run post-deploy scripts
 
-RUN conda init && . /root/.bashrc && \
-    conda activate /conda-envs/3fad3c9cdfa40bee9404f6a2e8fda69f && \
+RUN conda activate /conda-envs/3fad3c9cdfa40bee9404f6a2e8fda69f && \
     bash /conda-envs/3fad3c9cdfa40bee9404f6a2e8fda69f/post-deploy.sh && \
     conda deactivate && \
     conda clean --all -y