diff --git a/.test/Snakefile b/.test/Snakefile index d3ff278..a8dd4aa 100644 --- a/.test/Snakefile +++ b/.test/Snakefile @@ -12,7 +12,9 @@ __version__ = "1.3.0" # Rules include: "../workflow/core.smk" +include: "../workflow/rules/demix.smk" include: "../workflow/rules/context.smk" +include: "../workflow/rules/pangolin.smk" include: "../workflow/rules/report.smk" rule all: diff --git a/workflow/Snakefile b/workflow/Snakefile index d51459d..ea984fd 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -16,6 +16,8 @@ configfile: "config/targets.yaml" include: "core.smk" include: "rules/context.smk" +include: "rules/demix.smk" +include: "rules/pangolin.smk" include: "rules/report.smk" rule all: diff --git a/workflow/core.smk b/workflow/core.smk index 2938351..2bfe396 100644 --- a/workflow/core.smk +++ b/workflow/core.smk @@ -16,8 +16,6 @@ REPORT_DIR_TABLES = Path(OUTDIR/"report/tables") include: "rules/fetch.smk" include: "rules/fasta.smk" include: "rules/asr.smk" -include: "rules/demix.smk" include: "rules/vaf.smk" -include: "rules/pangolin.smk" include: "rules/distances.smk" include: "rules/evolution.smk"