diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..9f97022 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +target/ \ No newline at end of file diff --git a/src/main/java/org/panda/resource/UniProtSequence.java b/src/main/java/org/panda/resource/UniProtSequence.java index 726d172..2fc531b 100644 --- a/src/main/java/org/panda/resource/UniProtSequence.java +++ b/src/main/java/org/panda/resource/UniProtSequence.java @@ -129,11 +129,23 @@ public String getSeqAround(String idOrName, int prefixLen, int suffixLen, int lo */ int max = ((prefixLen > suffixLen ? prefixLen : suffixLen) * 2) + 1; + // max/2 is how many you want to left/right of central position + // if you want k to the right, and you are at the kth position or lesser, this is impossible + if(max/2 >= location){ + return null; + } + + /* + The call to getSeqAround takes the width as an argument. 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