ERROR: Failed building wheel for psycopg2-binary #34
Description
Hello,
I'm install PatrOwl on Ubuntu:
| Ubuntu Version | 20.04 |
| Python Version | 3.8 |
I'm getting an error on installing the requirements:
Requirement already satisfied: setuptools>=3.0 in ./env3/lib/python3.8/site-packages (from gunicorn==20.0.4->-r requirements.txt (line 24)) (56.0.0)
Building wheels for collected packages: psycopg2-binary
Building wheel for psycopg2-binary (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/krehan/PatrowlManager/env3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/setup.py'"'"'; __file__='"'"'/tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-cdw9bs_j
cwd: /tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/
Complete output (72 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/psycopg2
copying lib/tz.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_json.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/errorcodes.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/__init__.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/psycopg1.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extensions.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/sql.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extras.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_range.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/pool.py -> build/lib.linux-x86_64-3.8/psycopg2
creating build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async_keyword.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_transaction.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_basic.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_extras.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20_tpc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_lobject.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_psycopg2_dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/__init__.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_errcodes.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bugX000.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_sql.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_replication.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_with.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_dates.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_extras_dictcursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_copy.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bug_gc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testconfig.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_connection.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testutils.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_quote.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cancel.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_module.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_green.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_notify.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_fast_executemany.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
building 'psycopg2._psycopg' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/psycopg
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPSYCOPG_DEFAULT_PYDATETIME=1 -DPSYCOPG_VERSION=2.7.5 (dt dec pq3 ext lo64) -DPG_VERSION_NUM=130002 -DHAVE_LO64=1 -I/home/krehan/PatrowlManager/env3/include -I/usr/include/python3.8 -I. -I/usr/include/postgresql -I/usr/include/postgresql/13/server -c psycopg/psycopgmodule.c -o build/temp.linux-x86_64-3.8/psycopg/psycopgmodule.o -Wdeclaration-after-statement
psycopg/psycopgmodule.c: In function ‘psyco_is_main_interp’:
psycopg/psycopgmodule.c:689:18: error: dereferencing pointer to incomplete type ‘PyInterpreterState’ {aka ‘struct _is’}
689 | while (interp->next)
| ^~
It appears you are missing some prerequisite to build the package from source.
You may install a binary package by installing 'psycopg2-binary' from PyPI.
If you want to install psycopg2 from source, please install the packages
required for the build and try again.
For further information please check the 'doc/src/install.rst' file (also at
<http://initd.org/psycopg/docs/install.html>).
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for psycopg2-binary
Running setup.py clean for psycopg2-binary
Failed to build psycopg2-binary
Installing collected packages: psycopg2-binary, psutil, netaddr, meld3, libmagic, jsonfield, gunicorn, futures, flower, djangorestframework-simplejwt, django-rest-swagger, django-reset-migrations, django-organizations, django-health-check, django-filter, django-extensions, django-debug-toolbar, django-dbconn-retry, django-datetime-widget, django-cursor-pagination, django-cors-headers, django-celery-results, django-celery-beat, django-annoying, backports-abc
Running setup.py install for psycopg2-binary ... error
ERROR: Command errored out with exit status 1:
command: /home/krehan/PatrowlManager/env3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/setup.py'"'"'; __file__='"'"'/tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-8bu3vpl3/install-record.txt --single-version-externally-managed --compile --install-headers /home/krehan/PatrowlManager/env3/include/site/python3.8/psycopg2-binary
cwd: /tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/
Complete output (72 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.8
creating build/lib.linux-x86_64-3.8/psycopg2
copying lib/tz.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_json.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/errorcodes.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/__init__.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/psycopg1.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extensions.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/sql.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/extras.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/_range.py -> build/lib.linux-x86_64-3.8/psycopg2
copying lib/pool.py -> build/lib.linux-x86_64-3.8/psycopg2
creating build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async_keyword.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_transaction.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_basic.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_ipaddress.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_types_extras.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20_tpc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_lobject.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_psycopg2_dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/__init__.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_errcodes.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bugX000.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_sql.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_replication.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_async.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_with.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_dates.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_extras_dictcursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_copy.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/dbapi20.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_bug_gc.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cursor.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testconfig.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_connection.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/testutils.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_quote.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_cancel.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_module.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_green.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_notify.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
copying tests/test_fast_executemany.py -> build/lib.linux-x86_64-3.8/psycopg2/tests
Skipping optional fixer: buffer
Skipping optional fixer: idioms
Skipping optional fixer: set_literal
Skipping optional fixer: ws_comma
running build_ext
building 'psycopg2._psycopg' extension
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/psycopg
x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPSYCOPG_DEFAULT_PYDATETIME=1 -DPSYCOPG_VERSION=2.7.5 (dt dec pq3 ext lo64) -DPG_VERSION_NUM=130002 -DHAVE_LO64=1 -I/home/krehan/PatrowlManager/env3/include -I/usr/include/python3.8 -I. -I/usr/include/postgresql -I/usr/include/postgresql/13/server -c psycopg/psycopgmodule.c -o build/temp.linux-x86_64-3.8/psycopg/psycopgmodule.o -Wdeclaration-after-statement
psycopg/psycopgmodule.c: In function ‘psyco_is_main_interp’:
psycopg/psycopgmodule.c:689:18: error: dereferencing pointer to incomplete type ‘PyInterpreterState’ {aka ‘struct _is’}
689 | while (interp->next)
| ^~
It appears you are missing some prerequisite to build the package from source.
You may install a binary package by installing 'psycopg2-binary' from PyPI.
If you want to install psycopg2 from source, please install the packages
required for the build and try again.
For further information please check the 'doc/src/install.rst' file (also at
<http://initd.org/psycopg/docs/install.html>).
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/krehan/PatrowlManager/env3/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/setup.py'"'"'; __file__='"'"'/tmp/pip-install-0xfgj_zy/psycopg2-binary_a90dbb947c954168bb4ca70555a95c68/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-8bu3vpl3/install-record.txt --single-version-externally-managed --compile --install-headers /home/krehan/PatrowlManager/env3/include/site/python3.8/psycopg2-binary Check the logs for full command output.
@MaKyOtOx , Where to look?
Regrds,
Khalid