Users have shown interest in being able to run DEA on a subset of the samples. To that end, we can add an option to the diffExAnalyze CLI tool to select which samples to use.
There is already a similar option for getDataMatrix, getRawDataMatrix and getSingleCellDataMatrix named --samples that could be re-used.
We should not allow curators to save those results to the database, only to a target file or directory.
@maubermann
Users have shown interest in being able to run DEA on a subset of the samples. To that end, we can add an option to the
diffExAnalyzeCLI tool to select which samples to use.There is already a similar option for
getDataMatrix,getRawDataMatrixandgetSingleCellDataMatrixnamed--samplesthat could be re-used.We should not allow curators to save those results to the database, only to a target file or directory.
@maubermann