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Downgrade warning for no fastq-load.py options to info
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rnaseq_pipeline/sources/sra.py

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -180,7 +180,8 @@ def read_xml_metadata(path, include_invalid_runs=False) -> List[SraRunMetadata]:
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if o in options:
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fastq_load_files.append(options[o])
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else:
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logger.warning('%s: The fastq-load.py loader does not have any option.', srr)
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# this is excessively common, so does not warrant a warning
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logger.info('%s: The fastq-load.py loader does not have any option.', srr)
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fastq_load_files = None
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issues |= SraRunIssue.NO_FASTQ_LOAD_OPTIONS
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else:

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