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1 | 1 | # Introduction |
2 | 2 |
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3 | | - Python implementation of Mouse Genotype to Phenotype mapping method for the prioritizing the genetic candidates based on the protein functional and genomic regulatory features |
| 3 | + Python implementation of Mouse Genome Phenotype to Genotype mapping method for the prioritizing the genetic candidates based on the protein functional and genomic regulatory features |
4 | 4 |
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5 | 5 | # installation |
6 | 6 |
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7 | 7 | pip install -i https://test.pypi.org/simple/ mgMap==0.0.2 --target=/path/where/to/install/ && cd mgmap |
8 | 8 | |
9 | 9 | |
10 | | -# instructions (source code) |
| 10 | +# instructions |
11 | 11 | |
12 | | - python3 mgmap.py -g filename.txt #in the Exmaple datafiles "gene.txt" format |
| 12 | + python3 mgmap.py -g filename.txt #in the Exmaple datafiles "gene.txt" format |
13 | 13 |
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14 | 14 | |
15 | | - python3 mmgap.py -nc filename.txt #in the Exmaple datafiles "regulatory.txt" format |
| 15 | + python3 mmgap.py -nc filename.txt #in the Exmaple datafiles "regulatory.txt" format |
16 | 16 |
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17 | | - PS: |
| 17 | + PS: |
18 | 18 |
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19 | | - The Functional data folder contains a help file for more information |
| 19 | + The Functional data folder contains a help file for more information |
20 | 20 | |
21 | | - The Regulatory data folder contains a help file for more information |
| 21 | + The Regulatory data folder contains a help file for more information |
22 | 22 | |
23 | 23 | # compatibility |
24 | 24 |
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25 | | - The package is compatibility with both Windows and Mac setup. |
| 25 | + The package is compatibility with both Windows and Mac setup. |
26 | 26 |
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27 | 27 | # requirements |
28 | 28 |
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29 | | - python 3 |
| 29 | + python 3 |
30 | 30 |
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31 | | - R (see R folder for more information) |
| 31 | + R (see R folder for more information) |
32 | 32 |
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33 | 33 | # tree |
34 | 34 |
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35 | | - The package can be used to analyse the impact of mutations on the protein functional regions like domains and PTM sites. Also, for regulatory regions like Promoter, enhancer etc. |
| 35 | + The package can be used to analyse the impact of mutations on the protein functional regions like domains and PTM sites. Also, for regulatory regions like Promoter, enhancer etc. |
36 | 36 |
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37 | 37 | File tree |
38 | 38 | ./mgmap/ |
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50 | 50 |
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51 | 51 | # contact |
52 | 52 |
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53 | | - email: aarslan@stanford.edu |
| 53 | + email: aarslan@stanford.edu |
54 | 54 |
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55 | | - visit: https://mmap.stanford.edu/ |
| 55 | + visit: https://mmap.stanford.edu/ |
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