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README.md

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# Introduction
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Python implementation of Mouse Genotype to Phenotype mapping method for the prioritizing the genetic candidates based on the protein functional and genomic regulatory features
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Python implementation of Mouse Genome Phenotype to Genotype mapping method for the prioritizing the genetic candidates based on the protein functional and genomic regulatory features
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# installation
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pip install -i https://test.pypi.org/simple/ mgMap==0.0.2 --target=/path/where/to/install/ && cd mgmap
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# instructions (source code)
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# instructions
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python3 mgmap.py -g filename.txt #in the Exmaple datafiles "gene.txt" format
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python3 mgmap.py -g filename.txt #in the Exmaple datafiles "gene.txt" format
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python3 mmgap.py -nc filename.txt #in the Exmaple datafiles "regulatory.txt" format
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python3 mmgap.py -nc filename.txt #in the Exmaple datafiles "regulatory.txt" format
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PS:
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PS:
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The Functional data folder contains a help file for more information
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The Functional data folder contains a help file for more information
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The Regulatory data folder contains a help file for more information
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The Regulatory data folder contains a help file for more information
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# compatibility
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The package is compatibility with both Windows and Mac setup.
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The package is compatibility with both Windows and Mac setup.
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# requirements
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python 3
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python 3
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R (see R folder for more information)
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R (see R folder for more information)
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# tree
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The package can be used to analyse the impact of mutations on the protein functional regions like domains and PTM sites. Also, for regulatory regions like Promoter, enhancer etc.
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The package can be used to analyse the impact of mutations on the protein functional regions like domains and PTM sites. Also, for regulatory regions like Promoter, enhancer etc.
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# contact
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email: aarslan@stanford.edu
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email: aarslan@stanford.edu
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visit: https://mmap.stanford.edu/
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visit: https://mmap.stanford.edu/

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