Merge branch 'main' of https://github.com/PennLINC/affective-instability

Author: tsalo

processing/run_aslprep.sbatch

@@ -61,6 +61,6 @@ exitcode=$?
 
 # Output results to a table
 echo "sub-$subject   ${SLURM_ARRAY_TASK_ID}    $exitcode" \
-      >> ${CODE_DIR}/jobs/"${SLURM_JOB_NAME}"."${SLURM_ARRAY_JOB_ID}".tsv
+      >> ${CODE_DIR}/processing/jobs/"${SLURM_JOB_NAME}"."${SLURM_ARRAY_JOB_ID}".tsv
 echo Finished tasks "${SLURM_ARRAY_TASK_ID}" with exit code $exitcode
 exit $exitcode

processing/run_tedana.py

@@ -127,7 +127,7 @@ def run_tedana(raw_dir, fmriprep_dir, aroma_dir, temp_dir, tedana_out_dir):
             subject,
             "ses-1",
             "func",
-            f"{mask_base}_desc-confounds_timeseries.tsv",
+            f"{mask_base}_part-mag_desc-confounds_timeseries.tsv",
         )
         confounds_df = pd.read_table(confounds_file)
         nss_cols = [c for c in confounds_df.columns if c.startswith("non_steady_state_outlier")]