Summary
This can cause out-of-space errors in a container, since /tmp is part of the container. For now, we will try binding TEMPDIR to /tmp in the container, but in the long run we should shim the tmpnam command in the FSL directory within the container.
See https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=fsl;3c8c7920.1711.
Additional details
- ASLPrep version:
- Docker version:
- Singularity version:
What were you trying to do?
What did you expect to happen?
What actually happened?
Reproducing the bug