| layout |
ontology_detail |
| id |
envo |
| contact |
| email |
label |
github |
p.buttigieg@gmail.com |
Pier Luigi Buttigieg |
pbuttigieg |
|
| description |
Ontology of environmental features and habitats |
| domain |
environment |
| homepage |
http://environmentontology.org/ |
| page |
https://github.com/EnvironmentOntology/envo |
| license |
|
| publications |
| id |
title |
|
The environment ontology: contextualising biological and biomedical entities |
|
| id |
title |
|
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation |
|
|
| products |
| id |
title |
envo.owl |
main ENVO OWL release |
|
| id |
title |
envo.json |
ENVO in obographs JSON format |
|
| id |
title |
envo.obo |
ENVO in OBO Format. May be lossy |
|
| id |
title |
envo/subsets/envo-basic.obo |
OBO-Basic edition of ENVO |
|
| id |
title |
envo/subsets/envoEmpo.owl |
Earth Microbiome Project subset |
|
| id |
title |
homepage |
envo/subsets/EnvO-Lite-GSC.obo |
GSC Lite subset of ENVO |
|
|
|
| title |
Environment Ontology |
| dependencies |
|
| usages |
| user |
description |
example |
|
Samples collected during Tara Oceans expedition are annotated with ENVO |
| url |
description |
|
Sample collected during the Tara Oceans expedition (2009-2013) at station TARA_004 (latitudeN=36.5533, longitudeE=-6.5669) |
|
|
|
| user |
description |
example |
|
Annotation of habitats of microbes |
| url |
description |
|
Annotation of habitat of Pseudovibrio sp. FO-BEG1 to marine environment |
|
|
|
| user |
description |
example |
|
Annotation and semantic search over microbial data sets |
| url |
description |
|
Example metadata of a sample of marine water near Lisboa, taken as part of the Ocean Sampling Day Project ( https://www.microb3.eu/osd.html). ENVO is used for the fields environmental feature, material, and biome. |
|
|
|
|
| jobs |
|
| build |
| checkout |
email_cc |
system |
path |
method |
infallible |
|
cjmungall@lbl.gov |
git |
. |
vcs |
1 |
|
| tracker |
https://github.com/EnvironmentOntology/envo/issues/ |
| activity_status |
active |
EnvO is a community ontology for the concise, controlled description of environments.
Envo can be cited as:
Buttigieg, P. L., Morrison, N., Smith, B., Mungall, C. J., & Lewis, S. E. (2013). The environment ontology: contextualising biological and biomedical entities. Journal of Biomedical Semantics, 4(1), 43. doi:10.1186/2041-1480-4-43
Or for latest developments:
Buttigieg, P. L., Pafilis, E., Lewis, S. E., Schildhauer, M. P., Walls, R. L., & Mungall, C. J. (2016). The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation. Journal of Biomedical Semantics, 7(1), 57. doi:10.1186/s13326-016-0097-6
