eupath.md

layout	ontology_detail
id	eupath
contact	email label github stoeckrt@pennmedicine.upenn.edu Chris Stoeckert cstoeckert
license	url label http://creativecommons.org/licenses/by/4.0/ CC-BY
depicted_by	https://raw.githubusercontent.com/EuPathDB/communitysite/master/assets/images/VEuPathDB-logo-s.png
domain	functional genomics, population biology, clinical epidemiology, and microbiomes
description	An ontology is developed to support Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org).
homepage	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology
products	id eupath.owl
title	VEuPathDB ontology
tracker	https://github.com/VEuPathDB-ontology/VEuPathDB-ontology/issues
usages	user type description https://veupathdb.org annotation and query The VEuPathDB ontology is used in the VEuPathDB (Eukaryotic Pathogen, Vector & Host Informatics Resources) covers both functional genomics and population biology. user type description https://clinepidb.org annotation and query The VEuPathDB ontology is used in the clinical epidemiology resources. user type description https://microbiomedb.org annotation and query The VEuPathDB ontology is used in the MicrobiomeDB, a systems biology platform for integrating, mining and analyzing microbiome experiments.
activity_status	active

The VEuPathDB ontology is an application ontology developed to encode our understanding of what data is about in the public resources developed and maintained by the Eukaryotic Pathogen, Host & Vector Genomics Resource (VEuPathDB; https://veupathdb.org). The VEuPathDB ontology was previously named the EuPathDB ontology prior to EuPathDB joining with VectorBase.The ontology was built based on the Ontology of Biomedical Investigations (OBI) with integration of other OBO ontologies such as PATO, OGMS, DO, etc. as needed for coverage. Currently the VEuPath ontology is primarily intended to be used for support of the VEuPathDB sites. Terms with VEuPathDB ontology IDs that are not specific to VEuPathDB will be submitted to OBO Foundry ontologies for subsequent import and replacement of those terms when they are available.