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lines changed Original file line number Diff line number Diff line change 1+ # McFAE (Molecular Complex Feature Attribution Extraction)
2+
13## Setup environment
24
35All required packages can be installed in a conda environment. ` conda ` and ` git ` need to be installed on your machine.
46Installation can be done with
57
68 conda env create -f environment.yml
79
8- The TCR-epitope Feature Attributions (TEFA) environment can be activated with
10+ The McFAE environment can be activated with
911
10- conda activate TEFA
12+ conda activate McFAE
1113
1214Run following script to unzip the data. This requires ` unzip ` to be installed, the zips at ` data/pdb/pdb.zip `
1315and ` data/tcr3d_images/imrex_input_images.zip ` can also be extracted manually.
Original file line number Diff line number Diff line change 1- name : TEFA
1+ name : McFAE
22channels :
33 - defaults
44 - bioconda
@@ -36,4 +36,4 @@ dependencies:
3636 - shap==0.40.0
3737 - saliency==0.1.3
3838 - colour==0.1.5
39- - " --editable ./ImRex"
39+ - " --editable ./ImRex"
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