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user-guide/30-Advanced/02-growth-rate-model.md

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@@ -95,7 +95,7 @@ To upload your optical density and dosing events data to the Pioreactor, you nee
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:::tip
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If using the Pioreactor UI to export datasets, these already have the required schema.
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If using the Pioreactor UI to export datasets _Optical density_ and _Dosing event log_, these already have the correct schema.
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:::
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| **Column** | **Required?** | **Expected dtype** | **Description** |
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| -------------------------------- | ------------- | --------------------- | --------------------------------------------------------------------------------------------- |
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| `event` | Yes | **category** (string) | Either `add_media`, `add_alt_media`, or `remove_waste`. Other strings are treated as distinct categories. |
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| `volume_change_ml` | Yes | **float** | Signed volume change (mL). Convention: positive for **additions**, negative for **removals**. |
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| `event` | Yes | **category** (string) | Either `add_media`, `add_alt_media`, or `remove_waste`. |
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| `volume_change_ml` | Yes | **float** | volume change (mL) |
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| `hours_since_experiment_created` | Yes | **float** | Timestamp in **hours**, exactly matching the OD clock. |
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#### Minimal example
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```csv
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event,volume_change_ml,hours_since_experiment_created
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add_media,1.0,1.533
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remove_waste,-1.0,1.544
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remove_waste,-2.0,1.567
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remove_waste,1.0,1.544
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remove_waste,2.0,1.567
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```
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### Common pitfalls
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* **Header spelling matters**`odReading`, `OD_reading`, or trailing spaces will fail validation.
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* **Mixed delimiters** – Ensure you’re saving with commas; semicolons require a manual find-&-replace.
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* **Mixed delimiters** – Ensure you’re saving with commas.
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* **Units**`volume_change_ml` must be millilitres; convert L → mL beforehand.
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* **Consistent clock** – Both files must use the same `hours_since_experiment_created` reference, or dilution jumps won’t align.
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---
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### Quick checklist before uploading
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1. **Open in a plain-text editor** – Verify the first line matches the header tables above.
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2. **Scan for blank lines** – Delete empty rows at the end; they sometimes appear after Excel saves.
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3. **Check decimals** – European locales may export `0,1725`; switch to `.` decimal point.
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4. **Save as UTF-8 CSV** – Most editors do this by default; avoid Excel’s “CSV (Macintosh)” variant.
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