mcp-utils is now on pypiy

Author: CamDavidsonPilon

.github/workflows/build.yaml

@@ -60,11 +60,6 @@ jobs:
       - name: 🏗 Install dependencies
         run: |
           python -m pip install --upgrade pip
-      - name: 🔨 Build mcp_utils wheel (from tag)
-        run: |
-          mkdir -p wheels
-          # Build from the tagged version
-          pip wheel --no-deps -w wheels git+https://github.com/pioreactor/mcp-utils.git@2.0.1
       - name: 🔨 Download wheels for all dependencies
         run: |
           pip download -d wheels \

CHANGELOG.md

@@ -18,6 +18,7 @@
              waste_: 0.5
    ```
  - Advanced config for automations: the UI’s “Advanced” menu (temporary config overrides at start) is now available when launching automations, not just individual jobs. The options shown come from the `[<job_name>.config]` section.
+ - CLI: added leader-only experiment management commands — `pio experiment create <NAME>`, `pio experiment list`, and `pio experiment delete <NAME>`.
 
 #### Bug fixes
 

config.dev.ini

@@ -15,13 +15,6 @@ C=
 D=
 
 
-
-[air_bubbler]
-# this should be tuned to produce modest bubbles
-duty_cycle=10
-
-
-
 [bioreactor]
 # max_working_volume_ml is determined by the volume that just touches the outflow tube. I.e. if you
 # where to keep running the waste pump, what would the stable volume be.
@@ -91,13 +84,6 @@ leader_hostname=localhost
 leader_address=localhost
 
 
-[cluster.inventory]
-testing_unit=0
-localhost=0
-pioreactor2=1
-pioreactor3=0
-
-
 [ui.overview.settings]
 filtered_od_lookback_minutes=240
 raw_od_lookback_minutes=240
@@ -114,7 +100,7 @@ proto=http
 # 1 is show, 0 is hide
 implied_growth_rate=1
 implied_daily_growth_rate=0
-fraction_of_volume_that_is_alternative_media=0
+fraction_of_volume_that_is_alternative_media=1
 normalized_optical_density=1
 raw_optical_density=1
 temperature=1
@@ -124,6 +110,7 @@ temperature=1
 # 1 is show, 0 is hide
 dosings=1
 event_logs=1
+profiles=1
 
 
 [dosing_automation.pid_morbidostat]
@@ -137,16 +124,6 @@ Kp=.01
 Ki=.01
 Kd=.01
 
-[data_sharing_with_pioreactor]
-# This enables sending error logs back to us developers at Pioreactor.
-# (switch to 1 to enable sending, 0 to disable any sending)
-send_errors_to_Pioreactor=1
-# This enables sending optical density statistics back to us developers at Pioreactor.
-# We use this data to fine tune the Pioreactor's statistical models.
-# (switch to 1 to enable sending, 0 to disable any sending)
-send_od_statistics_to_Pioreactor=1
-
-
 [mqtt]
 username=pioreactor
 password=raspberry

core/pioreactor/actions/self_test.py

@@ -284,7 +284,7 @@ def test_REF_is_lower_than_0_dot_256_volts(
     ir_channel = cast(LedChannel, config["leds_reverse"][IR_keyword])
     config_ir_intensity = config.get("od_reading.config", "ir_led_intensity")
     if config_ir_intensity == "auto":
-        ir_intensity = 50.0  # this has been our historical default, and should generally work. Default now is "auto", which targets 0.225 V into REF
+        ir_intensity = 70.0  # this has been our historical default, and should generally work. Default now is "auto", which targets 0.225 V into REF
     else:
         ir_intensity = float(config_ir_intensity)
 
@@ -467,10 +467,10 @@ def _run(self, managed_state, logger: CustomLogger, unit: str, testing_experimen
         for test in self.tests_to_run:
             test_name = test.__name__
 
+            res = True
             logger.debug(f"Starting test {test_name}...")
             try:
                 test(managed_state, logger, unit, testing_experiment)
-                res = True
             except Exception as e:
                 res = False
                 logger.debug(e, exc_info=True)

core/setup.py

@@ -29,7 +29,7 @@
 
 
 LEADER_REQUIREMENTS: list[str] = [
-    "mcp_utils==2.0.1",  # NOTE: if updating this version, create a tag in the local repo, push to gh, and update the build.yaml in this repo.
+    "mcp-utils-msgspec==2.1.0",
 ]
 
 

requirements/requirements_leader.txt

@@ -1,2 +1,2 @@
 -r requirements.txt
-mcp_utils==2.0.1
+mcp-utils-msgspec==2.1.0