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contrib changes from the dosing automation field changes
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11 files changed

+120
-118
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11 files changed

+120
-118
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asset-manifest.json

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{
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"files": {
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"main.css": "/static/css/main.dbb6a692.css",
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"main.js": "/static/js/main.31979bee.js",
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"main.js": "/static/js/main.fef2da12.js",
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"static/media/roboto-all-500-normal.woff": "/static/media/roboto-all-500-normal.0ab669b7a0d19b178f57.woff",
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"static/media/roboto-all-700-normal.woff": "/static/media/roboto-all-700-normal.a457fde362a540fcadff.woff",
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"static/media/roboto-all-400-normal.woff": "/static/media/roboto-all-400-normal.c5d001fa922fa66a147f.woff",
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"static/media/roboto-greek-ext-700-normal.woff2": "/static/media/roboto-greek-ext-700-normal.bd9854c751441ccc1a70.woff2",
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"index.html": "/index.html",
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"main.dbb6a692.css.map": "/static/css/main.dbb6a692.css.map",
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"main.31979bee.js.map": "/static/js/main.31979bee.js.map"
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"main.fef2da12.js.map": "/static/js/main.fef2da12.js.map"
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},
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"entrypoints": [
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"static/css/main.dbb6a692.css",
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"static/js/main.31979bee.js"
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"static/js/main.fef2da12.js"
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]
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}

contrib/automations/dosing/chemostat.yaml

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unit: min
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label: Time between dosing
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type: numeric
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- key: volume
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- key: exchange_volume_ml
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default: 0.5
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unit: mL
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label: Volume per dose
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label: Exchange volume
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type: numeric

contrib/automations/dosing/fed_batch.yaml

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unit: min
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label: Duration between additions
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type: numeric
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- key: volume
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- key: dosing_volume_ml
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default: 1.0
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unit: mL
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label: Volume per dose

contrib/automations/dosing/turbidostat.yaml

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unit: OD
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label: Target OD
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type: numeric
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- key: volume
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- key: exchange_volume_ml
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default: 1.0
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unit: mL
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label: Volume
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label: Exchange volume
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type: numeric
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- key: duration
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default: 0.25

contrib/jobs/04_dosing_automation.yaml

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type: numeric
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display: true
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description: Change how long to wait between dilutions. Typically between 0.5 and 60 minutes. Changing may immediately trigger a dosing event.
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- key: volume
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- key: exchange_volume_ml
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unit: mL
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label: Volume / dosing
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label: Exchange volume
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type: numeric
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display: true
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description: Change the volume per dilution. Typical values are between 0.0mL and 2.0mL.
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- key: automation_name
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type: string
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display: false
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- key: max_volume
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- key: max_working_volume_ml
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type: string
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display: false
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- key: liquid_volume
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- key: current_volume_ml
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type: string
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display: false

index.html

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<!doctype html><html lang="en"><head><meta charset="utf-8"/><link rel="icon" href="/favicon.ico"/><meta name="viewport" content="width=device-width,initial-scale=1"/><meta name="theme-color" content="#000000"/><meta name="description" content="Pioreactor"/><link rel="apple-touch-icon" href="/logo192.png"/><link rel="manifest" href="/manifest.json"/><script defer="defer" src="/static/js/main.31979bee.js"></script><link href="/static/css/main.dbb6a692.css" rel="stylesheet"></head><body><div id="root"></div></body></html>
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<!doctype html><html lang="en"><head><meta charset="utf-8"/><link rel="icon" href="/favicon.ico"/><meta name="viewport" content="width=device-width,initial-scale=1"/><meta name="theme-color" content="#000000"/><meta name="description" content="Pioreactor"/><link rel="apple-touch-icon" href="/logo192.png"/><link rel="manifest" href="/manifest.json"/><script defer="defer" src="/static/js/main.fef2da12.js"></script><link href="/static/css/main.dbb6a692.css" rel="stylesheet"></head><body><div id="root"></div></body></html>

pioreactorui/__init__.py

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# we currently only need to communicate with MQTT for the leader.
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# don't even connect if a worker - if the leader is down, this will crash and restart the server over and over.
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client.connect(
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host=pioreactor_config.get("mqtt", "broker_address", fallback="localhost"),
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host=pioreactor_config.get("mqtt", "broker_address", fallback="localhost").split(";")[
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0
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],
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port=pioreactor_config.getint("mqtt", "broker_port", fallback=1883),
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)
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logger.debug("Starting MQTT client")

static/js/main.31979bee.js

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static/js/main.fef2da12.js

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