Testing of internal C++ functions

Author: PiotrTymoszuk

NAMESPACE

@@ -3,3 +3,70 @@
 export(geneSBML)
 export(is_geneSBML)
 export(is_memoSaver)
+importFrom(Rcpp,sourceCpp)
+importFrom(dplyr,all_of)
+importFrom(dplyr,arrange)
+importFrom(dplyr,as_tibble)
+importFrom(dplyr,count)
+importFrom(dplyr,filter)
+importFrom(dplyr,group_by)
+importFrom(dplyr,left_join)
+importFrom(dplyr,mutate)
+importFrom(dplyr,select)
+importFrom(dplyr,summarise)
+importFrom(dplyr,tibble)
+importFrom(dplyr,top_n)
+importFrom(dplyr,ungroup)
+importFrom(furrr,furrr_options)
+importFrom(furrr,future_map)
+importFrom(future,plan)
+importFrom(generics,calculate)
+importFrom(generics,components)
+importFrom(generics,fit)
+importFrom(generics,visualize)
+importFrom(ggplot2,aes)
+importFrom(ggplot2,element_blank)
+importFrom(ggplot2,geom_bar)
+importFrom(ggplot2,geom_line)
+importFrom(ggplot2,geom_point)
+importFrom(ggplot2,geom_smooth)
+importFrom(ggplot2,geom_vline)
+importFrom(ggplot2,ggplot)
+importFrom(ggplot2,labs)
+importFrom(ggplot2,scale_color_manual)
+importFrom(ggplot2,scale_fill_manual)
+importFrom(ggplot2,scale_y_discrete)
+importFrom(ggplot2,theme)
+importFrom(methods,hasArg)
+importFrom(methods,slot)
+importFrom(purrr,compact)
+importFrom(purrr,map)
+importFrom(purrr,map2_chr)
+importFrom(purrr,map2_dfr)
+importFrom(purrr,map_chr)
+importFrom(purrr,map_dbl)
+importFrom(purrr,map_dfc)
+importFrom(purrr,map_lgl)
+importFrom(purrr,reduce)
+importFrom(purrr,safely)
+importFrom(purrr,transpose)
+importFrom(rlang,`!!`)
+importFrom(rlang,`.data`)
+importFrom(rlang,`.env`)
+importFrom(rlang,set_names)
+importFrom(stats,complete.cases)
+importFrom(stats,median)
+importFrom(stats,p.adjust)
+importFrom(stats,pnorm)
+importFrom(stats,qnorm)
+importFrom(stats,reorder)
+importFrom(stringi,stri_detect)
+importFrom(stringi,stri_extract)
+importFrom(stringi,stri_extract_all)
+importFrom(stringi,stri_replace)
+importFrom(stringi,stri_replace_all)
+importFrom(stringi,stri_replace_first_fixed)
+importFrom(stringi,stri_split)
+importFrom(tibble,column_to_rownames)
+importFrom(tibble,rownames_to_column)
+useDynLib(biggrExtra)

R/imports.R

@@ -0,0 +1,83 @@
+# Imports
+
+#' @importFrom dplyr filter
+#' @importFrom dplyr mutate
+#' @importFrom dplyr count
+#' @importFrom dplyr tibble
+#' @importFrom dplyr select
+#' @importFrom dplyr left_join
+#' @importFrom dplyr as_tibble
+#' @importFrom dplyr group_by
+#' @importFrom dplyr summarise
+#' @importFrom dplyr arrange
+#' @importFrom dplyr top_n
+#' @importFrom dplyr ungroup
+#' @importFrom dplyr all_of
+#'
+#' @importFrom tibble rownames_to_column
+#' @importFrom tibble column_to_rownames
+#'
+#' @importFrom purrr map
+#' @importFrom purrr compact
+#' @importFrom purrr map_chr
+#' @importFrom purrr map_dfc
+#' @importFrom purrr map_lgl
+#' @importFrom purrr map2_dfr
+#' @importFrom purrr map2_chr
+#' @importFrom purrr safely
+#' @importFrom purrr map_dbl
+#' @importFrom purrr transpose
+#' @importFrom purrr reduce
+#'
+#' @importFrom ggplot2 ggplot
+#' @importFrom ggplot2 aes
+#' @importFrom ggplot2 geom_vline
+#' @importFrom ggplot2 geom_bar
+#' @importFrom ggplot2 scale_fill_manual
+#' @importFrom ggplot2 scale_color_manual
+#' @importFrom ggplot2 theme
+#' @importFrom ggplot2 labs
+#' @importFrom ggplot2 scale_y_discrete
+#' @importFrom ggplot2 geom_smooth
+#' @importFrom ggplot2 geom_point
+#' @importFrom ggplot2 geom_line
+#' @importFrom ggplot2 element_blank
+#'
+#' @importFrom rlang set_names
+#' @importFrom rlang `.data`
+#' @importFrom rlang `.env`
+#' @importFrom rlang `!!`
+#'
+#' @importFrom stringi stri_detect
+#' @importFrom stringi stri_replace
+#' @importFrom stringi stri_split
+#' @importFrom stringi stri_replace_all
+#' @importFrom stringi stri_extract
+#' @importFrom stringi stri_extract_all
+#' @importFrom stringi stri_replace_first_fixed
+#'
+#' @importFrom generics calculate
+#' @importFrom generics components
+#' @importFrom generics fit
+#' @importFrom generics visualize
+#'
+#' @importFrom Rcpp sourceCpp
+#'
+#' @importFrom future plan
+#'
+#' @importFrom furrr future_map
+#' @importFrom furrr furrr_options
+#'
+#' @importFrom methods slot
+#' @importFrom methods hasArg
+#'
+#' @importFrom stats median
+#' @importFrom stats reorder
+#' @importFrom stats complete.cases
+#' @importFrom stats p.adjust
+#' @importFrom stats qnorm
+#' @importFrom stats pnorm
+#'
+#' @useDynLib biggrExtra
+
+  NULL

inst/examples/development.R

@@ -0,0 +1,17 @@
+# Tests during the development
+
+# packages -----
+
+  library(tidyverse)
+  library(rlang)
+  library(stringi)
+
+  library(biggrExtra)
+
+# Testing of internal C++ functions --------
+
+  biggrExtra:::bca(1:10)
+  biggrExtra:::perci(1:10)
+
+  biggrExtra:::Median(1:10)
+  biggrExtra:::vecDraws(1:10, size = 5, n_iter = 10)