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2790 lines (2412 loc) · 126 KB
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format-version: 1.2
data-version: ppo/releases/2025-06-16/ppo-base.owl
idspace: dce http://purl.org/dc/elements/1.1/
idspace: dcterms http://purl.org/dc/terms/
ontology: ppo/ppo-base
property_value: dce:type IAO:8000001
property_value: dcterms:description "An ontology that defines plant phenological classes and is used to run the plantphenology.org data portal. Reuses terms from PO and PATO where possible." xsd:string
property_value: dcterms:license Unspecified
property_value: dcterms:title "Plant Phenology Ontology" xsd:string
property_value: owl:versionInfo "2025-06-16" xsd:string
[Term]
id: PPO:0001000
name: herbaceous plant
is_a: PO:0000003
[Term]
id: PPO:0001001
name: woody plant
is_a: PO:0000003
[Term]
id: PPO:0001002
name: perennial plant
is_a: PO:0000003
[Term]
id: PPO:0001003
name: new shoot system
def: "A vegetative shoot system that does not yet have any unfolded true leaves." []
is_a: PO:0025607
[Term]
id: PPO:0001004
name: new above-ground shoot-borne shoot system
is_a: PPO:0001003 ! new shoot system
[Term]
id: PPO:0001005
name: new shoot system emerging from ground
is_a: PPO:0001003 ! new shoot system
[Term]
id: PPO:0001006
name: new shoot system emerging from ground in first growth cycle
is_a: PPO:0001005 ! new shoot system emerging from ground
[Term]
id: PPO:0001007
name: seedling
is_a: PO:0000003
is_a: UBERON:0001062
relationship: PPO:0000010 PPO:0001006 ! has visible part new shoot system emerging from ground in first growth cycle
[Term]
id: PPO:0001008
name: new shoot system emerging from ground in later growth cycle
is_a: PPO:0001005 ! new shoot system emerging from ground
[Term]
id: PPO:0001009
name: dormant vegetative bud
def: "A vegetative bud that is participating in a bud dormancy process." []
is_a: PO:0000058
intersection_of: PO:0000058
intersection_of: RO:0000056 GO:0097207
relationship: RO:0000056 GO:0097207
property_value: IAO:0000118 "dormant leaf bud" xsd:string
[Term]
id: PPO:0001010
name: non-dormant vegetative bud
def: "A vegetative bud that is not participating in a bud dormancy process." []
is_a: PO:0000058
property_value: IAO:0000118 "non-dormant leaf bud" xsd:string
[Term]
id: PPO:0001011
name: swelling vegetative bud
def: "A non-dormant vegetative bud that is in the bud swell stage." []
is_a: PPO:0001010 ! non-dormant vegetative bud
intersection_of: PPO:0001010 ! non-dormant vegetative bud
intersection_of: RO:0000056 PO:0025531
relationship: RO:0000056 PO:0025531
property_value: IAO:0000118 "swelling leaf bud" xsd:string
[Term]
id: PPO:0001012
name: breaking vegetative bud
def: "A non-dormant vegetative bud that is in the bud burst stage." []
comment: If a breaking vegetative bud is present, it implies that a new shoot system and unfolding true leaf are also present and observable, hence the 'subclass of' axiom.
is_a: UBERON:0001062
intersection_of: PPO:0001010 ! non-dormant vegetative bud
intersection_of: RO:0000056 PO:0025532
relationship: RO:0000056 PO:0025532
property_value: IAO:0000118 "breaking leaf bud" xsd:string
[Term]
id: PPO:0001013
name: true leaf
def: "A vascular leaf that is not a cotyledon." []
is_a: PO:0009025
[Term]
id: PPO:0001014
name: unfolding true leaf
def: "An expanding true leaf that is in the vascular leaf unfolding stage." []
is_a: PPO:0001022 ! expanding true leaf
intersection_of: PPO:0001022 ! expanding true leaf
intersection_of: RO:0000056 PPO:0007005 ! vascular leaf unfolding stage
relationship: RO:0000056 PPO:0007005 ! vascular leaf unfolding stage
[Term]
id: PPO:0001015
name: unfolded true leaf
def: "A true leaf that is in the vascular leaf expanding unfolded stage or vascular leaf post-expansion stage or vascular leaf senescent stage." []
is_a: PPO:0001013 ! true leaf
[Term]
id: PPO:0001016
name: non-senescing unfolded true leaf
def: "A unfolded true leaf that is in the vascular leaf expanding unfolded stage or vascular leaf post-expansion stage." []
is_a: PPO:0001015 ! unfolded true leaf
[Term]
id: PPO:0001017
name: senescing true leaf
def: "A unfolded true leaf that is in the vascular leaf senescent stage." []
is_a: PPO:0001015 ! unfolded true leaf
intersection_of: PPO:0001015 ! unfolded true leaf
intersection_of: RO:0000056 PO:0001054
relationship: RO:0000056 PO:0001054
[Term]
id: PPO:0001018
name: immature unfolded true leaf
def: "A non-senescing unfolded true leaf that is in the vascular leaf expanding unfolded stage or vascular leaf expanded immature stage." []
is_a: PPO:0001016 ! non-senescing unfolded true leaf
[Term]
id: PPO:0001019
name: mature true leaf
def: "A non-senescing unfolded true leaf that is in the vascular leaf mature stage." []
is_a: PPO:0001016 ! non-senescing unfolded true leaf
intersection_of: PPO:0001016 ! non-senescing unfolded true leaf
intersection_of: RO:0000056 PPO:0007008 ! vascular leaf mature stage
relationship: RO:0000056 PPO:0007008 ! vascular leaf mature stage
[Term]
id: PPO:0001020
name: expanding unfolded true leaf
def: "An expanding true leaf that is in the vascular leaf expanding unfolded stage." []
is_a: PPO:0001018 ! immature unfolded true leaf
is_a: PPO:0001022 ! expanding true leaf
intersection_of: PPO:0001022 ! expanding true leaf
intersection_of: RO:0000056 PPO:0007006 ! vascular leaf expanding unfolded stage
relationship: RO:0000056 PPO:0007006 ! vascular leaf expanding unfolded stage
[Term]
id: PPO:0001021
name: expanded immature true leaf
def: "An immature unfolded true leaf that is in the vascular leaf expanded immature stage." []
is_a: PPO:0001018 ! immature unfolded true leaf
intersection_of: PPO:0001018 ! immature unfolded true leaf
intersection_of: RO:0000056 PPO:0007007 ! vascular leaf expanded immature stage
relationship: RO:0000056 PPO:0007007 ! vascular leaf expanded immature stage
[Term]
id: PPO:0001022
name: expanding true leaf
def: "A true leaf that is in the vascular leaf expansion stage." []
is_a: PPO:0001013 ! true leaf
intersection_of: PPO:0001013 ! true leaf
intersection_of: RO:0000056 PO:0001052
relationship: RO:0000056 PO:0001052
[Term]
id: PPO:0001023
name: reproductive structure
def: "A plant structure that is either a reproductive shoot system or a fruit." []
is_a: PO:0009011
union_of: PO:0009001
union_of: PO:0025082
[Term]
id: PPO:0001024
name: mature seed
def: "A seed that has participated in a seed maturation stage." []
is_a: PO:0009010
[Term]
id: PPO:0001025
name: floral structure
[Term]
id: PPO:0001026
name: non-senesced reproductive shoot system
def: "A reproductive shoot system with at least one non-senesced floral organ." []
is_a: PO:0025082
property_value: IAO:0000118 "non-senesced floral structure" xsd:string
[Term]
id: PPO:0001027
name: unopened reproductive shoot system
def: "A non-senesced reproductive shoot system in which all floral organs are unopened." []
is_a: PPO:0001026 ! non-senesced reproductive shoot system
property_value: IAO:0000118 "unopened floral structure" xsd:string
[Term]
id: PPO:0001028
name: open reproductive shoot system
def: "A non-senesced reproductive shoot system with at least one open floral organ." []
is_a: PPO:0001026 ! non-senesced reproductive shoot system
is_a: UBERON:0001062
relationship: PPO:0000010 PO:0009046 ! has visible part
property_value: IAO:0000118 "open floral structure" xsd:string
[Term]
id: PPO:0001029
name: pollen-releasing reproductive shoot system
def: "An open reproductive shoot system with at least one pollen-releasing floral organ." []
is_a: PPO:0001028 ! open reproductive shoot system
relationship: PPO:0000010 PPO:0001034 ! has visible part pollen-releasing flower
property_value: IAO:0000118 "pollen-releasing floral structure" xsd:string
[Term]
id: PPO:0001030
name: senesced reproductive shoot system
def: "A reproductive shoot system that has completed floral organ senescence." []
is_a: PO:0025082
is_a: UBERON:0001062
relationship: PPO:0000010 PPO:0001035 ! has visible part senesced flower
property_value: IAO:0000118 "senesced floral structure" xsd:string
[Term]
id: PPO:0001031
name: non-senesced flower
def: "A flower in which all the petaloid floral organs have not completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence." []
is_a: PO:0009046
[Term]
id: PPO:0001032
name: unopened flower
def: "A 'non-senesced flower' that is in the 'unopened flower stage'." []
is_a: PPO:0001031 ! non-senesced flower
intersection_of: PPO:0001031 ! non-senesced flower
intersection_of: RO:0000056 PPO:0007009 ! unopened flower stage
relationship: RO:0000056 PPO:0007009 ! unopened flower stage
[Term]
id: PPO:0001033
name: open flower
def: "A 'non-senesced flower' that is in the 'open flower stage'." []
is_a: PPO:0001031 ! non-senesced flower
intersection_of: PPO:0001031 ! non-senesced flower
intersection_of: RO:0000056 PPO:0007010 ! open flower stage
relationship: RO:0000056 PPO:0007010 ! open flower stage
[Term]
id: PPO:0001034
name: pollen-releasing flower
def: "An 'open flower' that is in the 'pollen-releasing flower stage'." []
is_a: PPO:0001033 ! open flower
intersection_of: PPO:0001033 ! open flower
intersection_of: RO:0000056 PPO:0007011 ! pollen-releasing flower stage
relationship: RO:0000056 PPO:0007011 ! pollen-releasing flower stage
[Term]
id: PPO:0001035
name: senesced flower
def: "A flower in which all of the petaloid floral organs have completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence." []
is_a: PO:0009046
[Term]
id: PPO:0001036
name: non-senesced inflorescence
def: "An inflorescence with at least one non-senesced flower. In the case of an unopened inflorescence, the non-senesced flower(s) might not be visible." []
is_a: PO:0009049
property_value: IAO:0000118 "non-senesced flower head" xsd:string
[Term]
id: PPO:0001037
name: unopened inflorescence
def: "A non-senesced inflorescence in which all flowers are unopened flowers. The unopened flowers might not yet be visible." []
is_a: PPO:0001036 ! non-senesced inflorescence
property_value: IAO:0000118 "unopened flower head" xsd:string
[Term]
id: PPO:0001038
name: open inflorescence
def: "A non-senesced inflorescence with at least one open flower." []
is_a: PPO:0001036 ! non-senesced inflorescence
intersection_of: PPO:0001036 ! non-senesced inflorescence
intersection_of: PPO:0000010 PPO:0001033 ! has visible part open flower
relationship: PPO:0000010 PPO:0001033 ! has visible part open flower
property_value: IAO:0000118 "open flower head" xsd:string
[Term]
id: PPO:0001039
name: pollen-releasing inflorescence
def: "An open inflorescence with at least one pollen-releasing flower." []
is_a: PPO:0001038 ! open inflorescence
intersection_of: PPO:0001038 ! open inflorescence
intersection_of: PPO:0000010 PPO:0001034 ! has visible part pollen-releasing flower
relationship: PPO:0000010 PPO:0001034 ! has visible part pollen-releasing flower
property_value: IAO:0000118 "pollen-releasing flower head" xsd:string
[Term]
id: PPO:0001040
name: senesced inflorescence
def: "An inflorescence on which there are no remaining non-senesced flowers." []
is_a: PO:0009049
property_value: IAO:0000118 "senesced flower head" xsd:string
[Term]
id: PPO:0001041
name: compound fruit
def: "A reproductive structure composed of two or more fruits that have fused during development. Includes aggregate fruits (one flower contains several separate ovaries, which merge during development, e.g., raspberrries) or multiple fruits (several flowers, each with an ovary, develop into small fruits that are clustered or fused together into a larger fruit, e.g., pineapple)." []
comment: This term was created in the PPO because phenological studies often count aggregate fruits as a single fruit, which is not consistent with the PO definition of fruit.
is_a: PPO:0001042 ! simple fruit or compound fruit
[Term]
id: PPO:0001042
name: simple fruit or compound fruit
is_a: PO:0025496
is_a: PPO:0001023 ! reproductive structure
union_of: PO:0009001
union_of: PPO:0001041 ! compound fruit
[Term]
id: PPO:0001043
name: ripening fruit
def: "A simple fruit or compound fruit that is in the fruit ripening stage." []
[Term]
id: PPO:0001044
name: unripe fruit
def: "A ripening fruit that is in the fruit unripe stage." []
[Term]
id: PPO:0001045
name: ripe fruit
def: "A simple fruit or compound fruit that is in the fruit ripe stage." []
comment: Fruits with the species-specific definition of ripeness including color change, splitting of a capsule or readiness to drop but before visible deterioration begins.
is_a: PPO:0001042 ! simple fruit or compound fruit
intersection_of: PPO:0001042 ! simple fruit or compound fruit
intersection_of: RO:0000056 PPO:0007013 ! fruit ripe stage
relationship: RO:0000056 PPO:0007013 ! fruit ripe stage
[Term]
id: PPO:0001046
name: non-senesced microsporangiate strobilus
def: "A microsporangiate strobilus (pollen cone) that has not yet completed the microsporangiate strobilus pollen-releasing stage." []
is_a: PO:0005031
property_value: IAO:0000118 "non-senesced pollen cone" xsd:string
[Term]
id: PPO:0001047
name: open microsporangiate strobilus
def: "A non-senesced microsporangiate strobilus (pollen cone) that is in the microsporangiate strobilus open stage." []
is_a: PPO:0001046 ! non-senesced microsporangiate strobilus
intersection_of: PPO:0001046 ! non-senesced microsporangiate strobilus
intersection_of: RO:0000056 PPO:0007015 ! microsporangiate strobilus open stage
relationship: RO:0000056 PPO:0007015 ! microsporangiate strobilus open stage
property_value: IAO:0000118 "open pollen cone" xsd:string
[Term]
id: PPO:0001048
name: pollen-releasing microsporangiate strobilus
def: "An open microsporangiate strobilus (pollen cone) that is in the microsporangiate strobilus pollen-releasing stage." []
is_a: PPO:0001047 ! open microsporangiate strobilus
intersection_of: PPO:0001047 ! open microsporangiate strobilus
intersection_of: RO:0000056 PPO:0007016 ! microsporangiate strobilus pollen-releasing stage
relationship: RO:0000056 PPO:0007016 ! microsporangiate strobilus pollen-releasing stage
property_value: IAO:0000118 "pollen-releasing pollen cone" xsd:string
[Term]
id: PPO:0001049
name: non-senesced megasporangiate strobilus
def: "A megasporangiate strobilus (seed cone) that has not yet been abscised and has not yet released all of its seeds." []
is_a: PO:0005032
property_value: IAO:0000118 "non-senesced seed cone" xsd:string
[Term]
id: PPO:0001050
name: ripening megasporangiate strobilus
def: "A non-senesced megasporangiate strobilus that is in the megasporangiate strobilus ripening stage." []
property_value: IAO:0000118 "ripening seed cone" xsd:string
[Term]
id: PPO:0001051
name: unopened megasporangiate strobilus
def: "A non-senesced megasporangiate strobilus (seed cone) that is in the megasporangiate strobilus unopened stage." []
is_a: PPO:0001049 ! non-senesced megasporangiate strobilus
intersection_of: PPO:0001049 ! non-senesced megasporangiate strobilus
intersection_of: RO:0000056 PPO:0007018 ! megasporangiate strobilus unopened stage
relationship: RO:0000056 PPO:0007018 ! megasporangiate strobilus unopened stage
property_value: IAO:0000118 "unopened seed cone" xsd:string
[Term]
id: PPO:0001052
name: ripe megasporangiate strobilus
def: "A ripening megasporangiate strobilus that is in the megasporangiate strobilus ripe stage." []
property_value: IAO:0000118 "ripe seed cone" xsd:string
[Term]
id: PPO:0001053
name: portion of a plant
def: "A plant structure that is not a whole plant; i.e. a proper part of a whole plant. Note that a portion of a plant need no longer be physically part of the whole plant from which it originated (e.g., a herbarium specimen)." []
[Term]
id: PPO:0001054
name: open staminate flower
def: "A 'non-senesced staminate flower' that is in the 'open flower stage'." []
is_a: PPO:0001033 ! open flower
is_a: PPO:0001058 ! non-senesced staminate flower
intersection_of: PPO:0001058 ! non-senesced staminate flower
intersection_of: RO:0000056 PPO:0007010 ! open flower stage
property_value: IAO:0000118 "open male flower" xsd:string
[Term]
id: PPO:0001055
name: open pistillate flower
def: "A 'non-senesced pistillate flower' that is in the 'open flower stage'." []
is_a: PPO:0001033 ! open flower
is_a: PPO:0001059 ! non-senesced pistillate flower
intersection_of: PPO:0001059 ! non-senesced pistillate flower
intersection_of: RO:0000056 PPO:0007010 ! open flower stage
property_value: IAO:0000118 "open female flower" xsd:string
[Term]
id: PPO:0001056
name: unopened staminate flower
def: "A 'non-senesced staminate flower' that is in the 'unopened flower stage'." []
is_a: PPO:0001032 ! unopened flower
is_a: PPO:0001058 ! non-senesced staminate flower
intersection_of: PPO:0001058 ! non-senesced staminate flower
intersection_of: RO:0000056 PPO:0007009 ! unopened flower stage
property_value: IAO:0000118 "unopened male flower" xsd:string
[Term]
id: PPO:0001057
name: unopened pistillate flower
def: "A 'non-senesced pistillate flower' that is in the 'unopened flower stage'." []
is_a: PPO:0001032 ! unopened flower
is_a: PPO:0001059 ! non-senesced pistillate flower
intersection_of: PPO:0001059 ! non-senesced pistillate flower
intersection_of: RO:0000056 PPO:0007009 ! unopened flower stage
property_value: IAO:0000118 "unopened female flower" xsd:string
[Term]
id: PPO:0001058
name: non-senesced staminate flower
def: "A staminate flower in which all the petaloid floral organs have not completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence." []
is_a: PO:0025600
is_a: PPO:0001031 ! non-senesced flower
intersection_of: PO:0025600
intersection_of: PPO:0001031 ! non-senesced flower
property_value: IAO:0000118 "non-senesced male flower" xsd:string
[Term]
id: PPO:0001059
name: non-senesced pistillate flower
def: "A pistillate flower in which all the petaloid floral organs have not completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence." []
is_a: PO:0025599
is_a: PPO:0001031 ! non-senesced flower
intersection_of: PO:0025599
intersection_of: PPO:0001031 ! non-senesced flower
property_value: IAO:0000118 "non-senesced female flower" xsd:string
[Term]
id: PPO:0001060
name: senesced staminate flower
def: "A staminate flower in which all of the petaloid floral organs have completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence." []
is_a: PO:0025600
is_a: PPO:0001035 ! senesced flower
intersection_of: PO:0025600
intersection_of: PPO:0001035 ! senesced flower
property_value: IAO:0000118 "senesced male flower" xsd:string
[Term]
id: PPO:0001061
name: senesced pistillate flower
def: "A pistillate flower in which all of the petaloid floral organs have completed floral organ senescence. Petaloid floral organs generally are the petals, sepal, or tepals, but may also be floral bracts or petaloid anthers. For scoring phenology in grasses, petaloid floral organs can include lemma, palea or glume, even though a glume is not strictly a floral organ, because it encloses an inflorescence." []
is_a: PO:0025599
is_a: PPO:0001035 ! senesced flower
intersection_of: PO:0025599
intersection_of: PPO:0001035 ! senesced flower
property_value: IAO:0000118 "senesced female flower" xsd:string
[Term]
id: PPO:0001062
name: pollen-releasing staminate flower
def: "An 'open staminate flower' that is in the 'pollen-releasing flower stage'." []
is_a: PPO:0001034 ! pollen-releasing flower
is_a: PPO:0001054 ! open staminate flower
intersection_of: PPO:0001054 ! open staminate flower
intersection_of: RO:0000056 PPO:0007011 ! pollen-releasing flower stage
property_value: IAO:0000118 "pollen-releasing male flower" xsd:string
[Term]
id: PPO:0001063
name: senesced true leaf
def: "A senescing true leaf that may be abscised from the plant or still attached and that is completely dead. There is no reliable marker for when a leaf is completely dead, so this class is subjective and does not relate to a Plant Ontology plant structure development stage." []
is_a: PPO:0001017 ! senescing true leaf
[Term]
id: PPO:0001064
name: open megasporangiate strobilus
def: "A non-senesced megasporangiate strobilus (seed cone) that is in the megasporangiate strobilus open stage." []
is_a: PPO:0001049 ! non-senesced megasporangiate strobilus
intersection_of: PPO:0001049 ! non-senesced megasporangiate strobilus
intersection_of: RO:0000056 PPO:0007023 ! megasporangiate strobilus open stage
relationship: RO:0000056 PPO:0007023 ! megasporangiate strobilus open stage
property_value: IAO:0000118 "open seed cone" xsd:string
[Term]
id: PPO:0001065
name: immature post-fertilization megasporangiate strobilus
def: "An open megasporangiate strobilus (seed cone) that is in the megasporangiate strobilus post-fertilization immature stage." []
is_a: PPO:0001064 ! open megasporangiate strobilus
intersection_of: PPO:0001064 ! open megasporangiate strobilus
intersection_of: RO:0000056 PPO:0007024 ! megasporangiate strobilus post-fertilization immature stage
relationship: RO:0000056 PPO:0007024 ! megasporangiate strobilus post-fertilization immature stage
property_value: IAO:0000118 "immature post-fertilization seed cone" xsd:string
[Term]
id: PPO:0001066
name: mature megasporangiate strobilus
def: "An open megasporangiate strobilus (seed cone) that is in the megasporangiate strobilus mature stage." []
is_a: PPO:0001064 ! open megasporangiate strobilus
intersection_of: PPO:0001064 ! open megasporangiate strobilus
intersection_of: RO:0000056 PPO:0007025 ! megasporangiate strobilus mature stage
relationship: RO:0000056 PPO:0007025 ! megasporangiate strobilus mature stage
property_value: IAO:0000118 "mature seed cone" xsd:string
[Term]
id: PPO:0001067
name: dehisced megasporangiate strobilus
def: "A megasporangiate strobilus (seed cone) that is in the megasporangiate strobilus dehisced stage." []
is_a: PO:0005032
intersection_of: PO:0005032
intersection_of: RO:0000056 PPO:0007026 ! megasporangiate strobilus dehisced stage
relationship: RO:0000056 PPO:0007026 ! megasporangiate strobilus dehisced stage
property_value: IAO:0000118 "dehisced seed cone" xsd:string
[Term]
id: PPO:0001068
name: unopened microsporangiate strobilus
def: "A non-senesced microsporangiate strobilus (pollen cone) that is in the microsporangiate strobilus unopened stage." []
is_a: PPO:0001046 ! non-senesced microsporangiate strobilus
intersection_of: PPO:0001046 ! non-senesced microsporangiate strobilus
intersection_of: RO:0000056 PPO:0007027 ! microsporangiate strobilus unopened stage
relationship: RO:0000056 PPO:0007027 ! microsporangiate strobilus unopened stage
property_value: IAO:0000118 "unopened pollen cone" xsd:string
[Term]
id: PPO:0001069
name: senesced microsporangiate strobilus
def: "A microsporangiate strobilus (pollen cone) that has completed the microsporangiate strobilus pollen-releasing stage and is no longer actively producing or releasing pollen." []
is_a: PO:0005031
property_value: IAO:0000118 "senesced pollen cone" xsd:string
[Term]
id: PPO:0001070
name: developing fruit
def: "A simple fruit or compound fruit that is in the fruit developing stage, which includes both formation and ripening." []
comment: Fruits starting from the first visible swelling of the ovary until species-specific definition of "ripeness", exclusive.
is_a: PPO:0001042 ! simple fruit or compound fruit
intersection_of: PPO:0001042 ! simple fruit or compound fruit
intersection_of: RO:0000056 PPO:0007028 ! fruit developing stage
relationship: RO:0000056 PPO:0007028 ! fruit developing stage
[Term]
id: PPO:0001071
name: dehiscing ripe fruit
def: "A ripe fruit that is dehiscing." []
is_a: PPO:0001045 ! ripe fruit
[Term]
id: PPO:0001072
name: senescing fruit
def: "A simple fruit or compound fruit that is in the post-ripe phase and is undergoing a natural aging and deterioration process, often characterized by loss of color, flavor, and texture." []
comment: Overripe, deteriorating fruits or empty fruit capsules that have released all their seeds but are still attached to the plant.
is_a: PPO:0001042 ! simple fruit or compound fruit
[Term]
id: PPO:0001073
name: dehisced senescing fruit
def: "A senescing fruit that has split open and released its seeds." []
is_a: PPO:0001072 ! senescing fruit
[Term]
id: PPO:0001074
name: immature pre-fertilization megasporangiate strobilus
def: "An open megasporangiate strobilus (seed cone) that is in the megasporangiate strobilus pre-fertilization immature stage." []
is_a: PPO:0001064 ! open megasporangiate strobilus
intersection_of: PPO:0001064 ! open megasporangiate strobilus
intersection_of: RO:0000056 PPO:0007029 ! megasporangiate strobilus pre-fertilization immature stage
relationship: RO:0000056 PPO:0007029 ! megasporangiate strobilus pre-fertilization immature stage
property_value: IAO:0000118 "immature pre-fertilization seed cone" xsd:string
[Term]
id: PPO:0001075
name: breaking flower bud
def: "A flower bud that is in the flower bud breaking stage." []
is_a: PO:0000056
intersection_of: PO:0000056
intersection_of: RO:0000056 PPO:0007021 ! flower bud breaking stage
relationship: RO:0000056 PPO:0007021 ! flower bud breaking stage
[Term]
id: PPO:0001076
name: breaking inflorescence bud
def: "An inflorescence bud that is in the inflorescence bud breaking stage." []
is_a: PO:0000057
intersection_of: PO:0000057
intersection_of: RO:0000056 PPO:0007022 ! inflorescence bud breaking stage
relationship: RO:0000056 PPO:0007022 ! inflorescence bud breaking stage
property_value: IAO:0000118 "breaking flower head bud" xsd:string
[Term]
id: PPO:0002000
name: plant phenological trait
def: "A quality of a whole plant that provides phenologically relevant information about the whole plant." []
is_a: PATO:0000001
[Term]
id: PPO:0002001
name: plant structure presence
def: "A plant phenological trait that represents whether a plant structure is present or absent on a whole plant." []
comment: The number of plant structure can be 0 or more.
is_a: PPO:0002000 ! plant phenological trait
property_value: IAO:0000118 "presence of plant structure" xsd:string
[Term]
id: PPO:0002002
name: abscised plant structure presence
def: "A plant phenological trait that is measured by the number of some plant structure that a whole plant has abscised." []
comment: The number can be 0 or more and only includes plant structures that have recently abscised within the last growing season.
is_a: PPO:0002000 ! plant phenological trait
property_value: IAO:0000118 "presence of abscised plant structure" xsd:string
[Term]
id: PPO:0002003
name: new shoot system presence
def: "A plant structure presence that represents whether a new shoot system is present or absent on a whole plant." []
comment: The number of new shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of new shoot system" xsd:string
[Term]
id: PPO:0002004
name: new above-ground shoot-borne shoot system presence
def: "A plant structure presence that represents whether a new above-ground shoot-borne shoot system is present or absent on a whole plant." []
comment: The number of new above-ground shoot-borne shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of new above-ground shoot-borne shoot system" xsd:string
[Term]
id: PPO:0002005
name: new shoot system emerging from ground presence
def: "A plant structure presence that represents whether a new shoot system emerging from ground is present or absent on a whole plant." []
comment: The number of new shoot system emerging from ground can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of new shoot system emerging from ground" xsd:string
[Term]
id: PPO:0002006
name: new shoot system emerging from ground in first growth cycle presence
def: "A plant structure presence that represents whether a new shoot system emerging from ground in first growth cycle is present or absent on a whole plant." []
comment: The number of new shoot system emerging from ground in first growth cycle can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of new shoot system emerging from ground in first growth cycle" xsd:string
[Term]
id: PPO:0002007
name: seedling presence
def: "A plant phenological trait that is measured by whether or not a whole plant is a seedling." []
comment: For consistency with other trait measurements, seedling presence is also measured with a count, which must be a binary value: 0 if the plant is a seedling, 1 if it is not.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of seedling" xsd:string
[Term]
id: PPO:0002008
name: new shoot system emerging from ground in later growth cycle presence
def: "A plant structure presence that represents whether a new shoot system emerging from ground in later growth cycle is present or absent on a whole plant." []
comment: The number of new shoot system emerging from ground in later growth cycle can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of new shoot system emerging from ground in later growth cycle" xsd:string
[Term]
id: PPO:0002009
name: vegetative bud presence
def: "A plant structure presence that represents whether a vegetative bud is present or absent on a whole plant." []
comment: The number of vegetative bud can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of vegetative bud" xsd:string
[Term]
id: PPO:0002010
name: dormant vegetative bud presence
def: "A plant structure presence that represents whether a dormant vegetative bud is present or absent on a whole plant." []
comment: The number of dormant vegetative bud can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of dormant vegetative bud" xsd:string
[Term]
id: PPO:0002011
name: non-dormant vegetative bud presence
def: "A plant structure presence that represents whether a non-dormant vegetative bud is present or absent on a whole plant." []
comment: The number of non-dormant vegetative bud can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of non-dormant vegetative bud" xsd:string
[Term]
id: PPO:0002012
name: swelling vegetative bud presence
def: "A plant structure presence that represents whether a swelling vegetative bud is present or absent on a whole plant." []
comment: The number of swelling vegetative bud can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of swelling vegetative bud" xsd:string
[Term]
id: PPO:0002013
name: breaking vegetative bud presence
def: "A plant structure presence that represents whether a breaking vegetative bud is present or absent on a whole plant." []
comment: The number of breaking vegetative bud can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of breaking vegetative bud" xsd:string
[Term]
id: PPO:0002014
name: vascular leaf presence
def: "A plant structure presence that represents whether a vascular leaf is present or absent on a whole plant." []
comment: The number of vascular leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of vascular leaf" xsd:string
[Term]
id: PPO:0002015
name: true leaf presence
def: "A plant structure presence that represents whether a true leaf is present or absent on a whole plant." []
comment: The number of true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of true leaf" xsd:string
[Term]
id: PPO:0002016
name: unfolding true leaf presence
def: "A plant structure presence that represents whether a unfolding true leaf is present or absent on a whole plant." []
comment: The number of unfolding true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of unfolding true leaf" xsd:string
[Term]
id: PPO:0002017
name: unfolded true leaf presence
def: "A plant structure presence that represents whether a unfolded true leaf is present or absent on a whole plant." []
comment: The number of unfolded true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of unfolded true leaf" xsd:string
[Term]
id: PPO:0002018
name: non-senescing unfolded true leaf presence
def: "A plant structure presence that represents whether a non-senescing unfolded true leaf is present or absent on a whole plant." []
comment: The number of non-senescing unfolded true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of non-senescing unfolded true leaf" xsd:string
[Term]
id: PPO:0002019
name: senescing true leaf presence
def: "A plant structure presence that represents whether a senescing true leaf is present or absent on a whole plant." []
comment: The number of senescing true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of senescing true leaf" xsd:string
[Term]
id: PPO:0002020
name: immature unfolded true leaf presence
def: "A plant structure presence that represents whether a immature unfolded true leaf is present or absent on a whole plant." []
comment: The number of immature unfolded true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of immature unfolded true leaf" xsd:string
[Term]
id: PPO:0002021
name: mature true leaf presence
def: "A plant structure presence that represents whether a mature true leaf is present or absent on a whole plant." []
comment: The number of mature true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of mature true leaf" xsd:string
[Term]
id: PPO:0002022
name: expanding unfolded true leaf presence
def: "A plant structure presence that represents whether a expanding unfolded true leaf is present or absent on a whole plant." []
comment: The number of expanding unfolded true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of expanding unfolded true leaf" xsd:string
[Term]
id: PPO:0002023
name: expanded immature true leaf presence
def: "A plant structure presence that represents whether a expanded immature true leaf is present or absent on a whole plant." []
comment: The number of expanded immature true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of expanded immature true leaf" xsd:string
[Term]
id: PPO:0002024
name: expanding true leaf presence
def: "A plant structure presence that represents whether a expanding true leaf is present or absent on a whole plant." []
comment: The number of expanding true leaf can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of expanding true leaf" xsd:string
[Term]
id: PPO:0002025
name: reproductive structure presence
def: "A plant structure presence that represents whether a reproductive structure is present or absent on a whole plant." []
comment: The number of reproductive structure can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of reproductive structure" xsd:string
[Term]
id: PPO:0002026
name: reproductive shoot system presence
def: "A plant structure presence that represents whether a reproductive shoot system is present or absent on a whole plant." []
comment: The number of reproductive shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of reproductive shoot system" xsd:string
[Term]
id: PPO:0002027
name: non-senesced reproductive shoot system presence
def: "A plant structure presence that represents whether a non-senesced reproductive shoot system is present or absent on a whole plant." []
comment: The number of non-senesced reproductive shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of non-senesced reproductive shoot system" xsd:string
[Term]
id: PPO:0002028
name: unopened reproductive shoot system presence
def: "A plant structure presence that represents whether a unopened reproductive shoot system is present or absent on a whole plant." []
comment: The number of unopened reproductive shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of unopened reproductive shoot system" xsd:string
[Term]
id: PPO:0002029
name: open reproductive shoot system presence
def: "A plant structure presence that represents whether a open reproductive shoot system is present or absent on a whole plant." []
comment: The number of open reproductive shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of open reproductive shoot system" xsd:string
[Term]
id: PPO:0002030
name: pollen-releasing reproductive shoot system presence
def: "A plant structure presence that represents whether a pollen-releasing reproductive shoot system is present or absent on a whole plant." []
comment: The number of pollen-releasing reproductive shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of pollen-releasing reproductive shoot system" xsd:string
[Term]
id: PPO:0002031
name: senesced reproductive shoot system presence
def: "A plant structure presence that represents whether a senesced reproductive shoot system is present or absent on a whole plant." []
comment: The number of senesced reproductive shoot system can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of senesced reproductive shoot system" xsd:string
[Term]
id: PPO:0002032
name: flower presence
def: "A plant structure presence that represents whether a flower is present or absent on a whole plant." []
comment: The number of flower can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of flower" xsd:string
[Term]
id: PPO:0002033
name: non-senesced flower presence
def: "A plant structure presence that represents whether a non-senesced flower is present or absent on a whole plant." []
comment: The number of non-senesced flower can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of non-senesced flower" xsd:string
[Term]
id: PPO:0002034
name: unopened flower presence
def: "A plant structure presence that represents whether a unopened flower is present or absent on a whole plant." []
comment: The number of unopened flower can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of unopened flower" xsd:string
[Term]
id: PPO:0002035
name: open flower presence
def: "A plant structure presence that represents whether a open flower is present or absent on a whole plant." []
comment: The number of open flower can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of open flower" xsd:string
[Term]
id: PPO:0002036
name: pollen-releasing flower presence
def: "A plant structure presence that represents whether a pollen-releasing flower is present or absent on a whole plant." []
comment: The number of pollen-releasing flower can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of pollen-releasing flower" xsd:string
[Term]
id: PPO:0002037
name: senesced flower presence
def: "A plant structure presence that represents whether a senesced flower is present or absent on a whole plant." []
comment: The number of senesced flower can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of senesced flower" xsd:string
[Term]
id: PPO:0002038
name: inflorescence presence
def: "A plant structure presence that represents whether a inflorescence is present or absent on a whole plant." []
comment: The number of inflorescence can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of inflorescence" xsd:string
[Term]
id: PPO:0002039
name: non-senesced inflorescence presence
def: "A plant structure presence that represents whether a non-senesced inflorescence is present or absent on a whole plant." []
comment: The number of non-senesced inflorescence can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of non-senesced inflorescence" xsd:string
[Term]
id: PPO:0002040
name: unopened inflorescence presence
def: "A plant structure presence that represents whether a unopened inflorescence is present or absent on a whole plant." []
comment: The number of unopened inflorescence can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of unopened inflorescence" xsd:string
[Term]
id: PPO:0002041
name: open inflorescence presence
def: "A plant structure presence that represents whether a open inflorescence is present or absent on a whole plant." []
comment: The number of open inflorescence can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of open inflorescence" xsd:string
[Term]
id: PPO:0002042
name: pollen-releasing inflorescence presence
def: "A plant structure presence that represents whether a pollen-releasing inflorescence is present or absent on a whole plant." []
comment: The number of pollen-releasing inflorescence can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of pollen-releasing inflorescence" xsd:string
[Term]
id: PPO:0002043
name: senesced inflorescence presence
def: "A plant structure presence that represents whether a senesced inflorescence is present or absent on a whole plant." []
comment: The number of senesced inflorescence can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of senesced inflorescence" xsd:string
[Term]
id: PPO:0002044
name: simple fruit or compound fruit presence
def: "A plant structure presence that represents whether a simple fruit or compound fruit is present or absent on a whole plant." []
comment: The number of simple fruit or compound fruit can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of simple fruit or compound fruit" xsd:string
[Term]
id: PPO:0002045
name: ripening fruit presence
def: "A plant structure presence that represents whether a ripening fruit is present or absent on a whole plant." []
comment: The number of ripening fruit can be 0 or more.
property_value: IAO:0000118 "presence of ripening fruit" xsd:string
[Term]
id: PPO:0002046
name: unripe fruit presence
def: "A plant structure presence that represents whether a unripe fruit is present or absent on a whole plant." []
comment: The number of unripe fruit can be 0 or more.
property_value: IAO:0000118 "presence of unripe fruit" xsd:string
[Term]
id: PPO:0002047
name: ripe fruit presence
def: "A plant structure presence that represents whether a ripe fruit is present or absent on a whole plant." []
comment: The number of ripe fruit can be 0 or more.
is_a: PPO:0002001 ! plant structure presence
property_value: IAO:0000118 "presence of ripe fruit" xsd:string