| layout |
rule |
| id |
GORULE:0000006 |
| title |
IEP and HEP usage is restricted to terms from the Biological Process ontology |
| type |
filter |
| fail_mode |
hard |
| status |
implemented |
| contact |
go-quality@mailman.stanford.edu |
| implementations |
|
| examples |
| fail |
pass |
| comment |
format |
input |
Fails because uses IEP with a molecular function term. |
gaf |
GeneDB PF3D7_0507500 SUB1 GO:0005634 PMID:12764150 IEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB |
|
| comment |
format |
input |
Fails because uses HEP with a molecular function term. |
gaf |
GeneDB PF3D7_0507500 SUB1 GO:0005634 PMID:12764150 HEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB |
|
| comment |
format |
input |
Fails because uses IEP with a cellular component term. |
gaf |
GeneDB PF3D7_0507500 SUB1 GO:0005634 PMID:12764150 IEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB |
|
|
| comment |
format |
input |
Should pass |
gaf |
GeneDB PF3D7_0507500 SUB1 GO:0075317 PMID:12764150 IEP F subtilisin-like protease 1 gene NCBITaxon:36329 20090624 GeneDB |
|
|
|
The IEP and its high throughput equivalent, HEP, evidence codes are used where process involvement is inferred from
the timing or location of expression of a gene, particularly when
comparing a gene that is not yet characterized with the timing or
location of expression of genes known to be involved in a particular
process. This type of annotation is only suitable with terms from the
Biological Process ontology.
For more information, see the binding
guidelines
on the GO wiki.
Error report (number of errors) in [db_species]-summary.txt & owltools-check.txt (details).