-
Notifications
You must be signed in to change notification settings - Fork 40
Open
Labels
bugSomething isn't workingSomething isn't workingfeatureNew feature or requestNew feature or request
Description
This is a summary of the plugins on the master branch.
The following table shows a quick overview, while subsequent sections provide more details.
Summary Table
The columns are as follows:
Family: The group of plugins that the plugin belongs to. This refers to the (potentially nested) folder that the plugin is in.Plugin: The name of the plugin.- I have stripped the
polus-prefix from the plugin name. - Some plugins did not have the
-pluginpostfix.
- I have stripped the
Version: The version of the plugin.- If there is an open PR for the plugin, this number will reflect the version in the PR.
Language: The language(s) that the plugin is written in.Status: The status of the plugin.Updated: The plugin has been updated to the new standard for python plugins.Peer Review: The plugin has been updated to the new standard for python plugins and is currently in peer review.Old: The plugin has not been updated to the new standard for python plugins.Unknown: The plugin is not a python plugin.
PR: The PR number for the plugin.- If there is no PR, this will be
None.
- If there is no PR, this will be
bfio: The version of bfio that the plugin uses.- If the plugin does not use bfio, this will be
None. - 1.x refers to an undetermined version of bfio before the 2.0 release.
- 2.x refers to an undetermined version of bfio before the 2.1.9 release.
- If the plugin does not use bfio, this will be
filepattern: The version of filepattern that the plugin uses.- If the plugin does not use filepattern, this will be
None. - 1.x refers to an undetermined version of filepattern before the 2.0.0 release.
- test-2.2.7 refers to the version of filepattern on test-pypi.
- If the plugin does not use filepattern, this will be
preadator: The version of preadator that the plugin uses.- If the plugin does not use preadator, this will be
None.
- If the plugin does not use preadator, this will be
nyxus: The version of nyxus that the plugin uses.- If the plugin does not use nyxus, this will be
None.
- If the plugin does not use nyxus, this will be
Clustering
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| clustering | k-means-clustering-plugin | 0.3.2-dev | Python | Updated | None | None | 2.0.0 | None | 0.5.0 |
| clustering/K-NN | Distributed-Memory | None | C++ | Unknown | None | None | None | None | None |
| clustering/K-NN | Shared-Memory-GPU | 0.1.0 | Cuda | Unknown | None | None | None | None | None |
| clustering/K-NN | Shared-Memory-OpenMP | 0.1.0 | C++ | Unknown | None | None | None | None | None |
| clustering/K-NN | Shared-Memory-Serial | 0.1.0 | C++ | Unknown | None | None | None | None | None |
| clustering | feature-subsetting-plugin | 0.1.11 | Python | Old | None | None | 1.4.5 | None | None |
| clustering | hdbscan-clustering-plugin | 0.4.7 | Python | Old | None | None | None | None | None |
| clustering | outlier-removal-plugin | 0.2.5 | Python | Old | None | None | None | None | None |
Dimension Reduction
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| dimension_reduction/PCA | Distributed-Memory | Unknown | Python | Old | None | None | None | None | None |
| dimension_reduction/PCA | Shared-Memory | 0.1.3 | Python | Old | None | None | None | None | None |
| dimension_reduction/UMAP | Shared-Memory-GPU | 0.1.0 | C++/Cuda | Unknown | None | None | None | None | None |
| dimension_reduction/UMAP | Shared-Memory-OpenMP | 0.1.6 | C++ | Unknown | None | None | None | None | None |
Features
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| features | feature-segmentation-eval | 0.2.3 | Python | Updated | None | None | 2.0.1 | None | None |
| features | nyxus-plugin | 0.1.3 | Python | Old | None | None | 1.4.7 | 0.2.0 | 0.4.0 |
| features | pixel-segmentation-eval | 0.1.10 | Python | Updated | None | 2.1.9 | 2.0.1 | None | None |
| features | csv-statistics-plugin | 0.2.1 | Python | Old | None | None | 1.4.7 | None | None |
| features | feature-extraction-plugin | 0.12.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| features | imagenet-model-featurization-plugin | 0.1.3 | Python | Old | None | 2.1.9 | None | None | None |
| features | object-spectral-featurization-plugin | 0.1.2 | Python | Old | None | 2.1.9 | None | None | None |
| features | region-segmentation-eval | 0.2.3 | Python | Updated | None | 2.1.9 | 2.0.1 | None | None |
Formats
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| formats | file-renaming-plugin | 0.2.0 | Python | Updated | None | None | None | None | None |
| formats | label-to-vector-plugin | 0.7.0-dev30 | Python | Peer Review | #450 | 2.1.9 | 2.0.1 | None | None |
| formats | ome-converter-plugin | 0.3.0 | Python | Peer Review | #486 | 2.1.9 | test-2.2.7 | None | None |
| formats | czi-extract-plugin | 1.1.1 | Python | Old | None | 2.x | None | 0.2.0 | None |
| formats | fcs-to-csv-converter-plugin | 0.2.5 | Python | Old | None | None | None | None | None |
| formats | feather-to-tabular-plugin | 0.1.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| formats | imaris-parser-plugin | 0.3.3 | Python | Old | None | None | None | None | None |
| formats | multichannel-tiff-plugin | 0.2.3 | Python | Old | None | 1.x | 1.2.4 | None | None |
| formats | tabular-to-feather-plugin | 0.1.4 | Python | Old | None | None | 1.4.7 | None | None |
| formats | tiledtiff-converter-plugin | 1.1.2 | Java | Unknown | None | None | None | None | None |
| formats | vector-to-label-plugin | 0.7.0-dev34 | Python | Peer Review | #450 | 2.1.9 | 2.0.1 | None | None |
Regression
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| regression | basic-flatfield-estimation-plugin | 2.0.0 | Python | Updated | None | 2.1.9 | 2.0.0 | None | None |
| regression | theia-bleedthrough-estimation-plugin | 0.5.0-dev0 | Python | Peer Review | #451 | 2.3.1-dev0 | 2.0.1 | None | None |
Segmentation
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| segmentation | aics-classic-seg-plugin | 0.1.11 | Python | Old | None | None | None | None | None |
| segmentation | cell-nuclei-segmentation | 0.1.4 | Python | Old | None | None | None | None | None |
| segmentation | imagej-threshold-apply-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-huang-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-ij1-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-intermodes-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-isodata-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-li-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-maxentropy-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-maxlikelyhood-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-mean-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-minerror-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-minimum-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-moments-plugin | 0.4.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| segmentation | imagej-threshold-otsu-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-percentile-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | imagej-threshold-renyientropy-plugin | 0.4.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| segmentation | imagej-threshold-rosin-plugin | 0.4.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| segmentation | imagej-threshold-shanbhag-plugin | 0.4.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| segmentation | imagej-threshold-triangle-plugin | 0.4.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| segmentation | imagej-threshold-yen-plugin | 0.4.2 | Python | Old | None | Unknown | 1.4.4 | None | None |
| segmentation | smp-training-plugin | 0.5.11 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| segmentation | z01-segmentation-plugin | 0.2.0 | Python | Old | None | 2.x | None | None | None |
Transforms
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| transforms | recycle-vector-plugin | 1.5.0 | Python | Old | None | None | 1.4.7 | None | None |
| transforms/images | apply-flatfield-plugin | 2.0.0-dev8 | Python | Peer Review | #443 | 2.1.9 | 2.0.0 | None | None |
| transforms/images | image-assembler-plugin | 1.4.0-dev0 | Python | Peer Review | #479, #481 | 2.1.9 | 2.0.4 | 0.4.0.dev2 | None |
| transforms/images | image-calculator-plugin | 0.2.0 | Python | Updated | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | lumos-bleedthrough-correction-plugin | 0.1.0 | Python | Updated | None | 2.1.9 | 2.0.0 | None | None |
| transforms/images | montage-plugin | 0.5.0 | Python | Updated | None | 2.1.9 | 2.0.0 | None | None |
| transforms/images | autocropping-plugin | 1.0.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | binary-operations-plugin | 0.4.2 | Python | Old | None | 1.x | 1.4.7 | None | None |
| transforms/images | ftl-label-plugin | 0.3.10 | Python/CPython/Rust | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | image-registration-plugin | 0.3.5 | Python | Old | None | 1.x | 1.2.4 | None | None |
| transforms/images | imagej-deconvolve-richardsonlucy-plugin | 0.4.3 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-deconvolve-richardsonlucytv-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-addpoissonnoise-plugin | 0.4.4 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-convolve-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-correlate-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-derivativegauss-plugin | 0.4.4 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-dog-plugin | 0.3.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-frangivesselness-plugin | 0.4.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-gauss-plugin | 0.3.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-partialderivative-plugin | 0.3.5 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-sobel-plugin | 0.3.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-filter-tubeness-plugin | 0.3.8 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-image-integral-plugin | 0.3.2 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | imagej-image-invert-plugin | 0.4.0 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| transforms/images | intensity-projection-plugin | 1.0.0 | Python | Old | None | 2.0.5 | None | 0.2.0 | None |
| transforms/images | rolling-ball-plugin | 1.1.0-dev0 | Python | Peer Review | #429 | 2.1.9 | None | None | None |
| transforms/images | stack-z-slice-plugin | 1.2.4 | Python | Old | None | 2.x | 1.4.7 | 0.2.0 | None |
| transforms/images | roi-relabel-plugin | 0.2.2 | Python | Updated | None | 2.1.9 | 2.0.0 | None | None |
| transforms/tabular | csv-merger-plugin | 0.4.0 | Python | Old | None | None | 1.4.7 | None | None |
| transforms/tabular | generalized-linear-model-plugin | 0.2.5 | R | Unknown | None | None | None | None | None |
| transforms/tabular | tabular-thresholding-plugin | 0.1.3 | Python | Updated | None | None | test-2.2.7 | None | None |
Utils
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| utils | filepattern-generator-plugin | 0.2.1 | Python | Old | None | None | 1.4.7 | None | None |
| utils | csv-collection-merger | 0.1.1 | sh | Old | None | None | None | None | None |
| utils | generic-to-image-collection-plugin | 0.1.1 | Python | Old | None | 2.x | 1.4.7 | None | None |
| utils | imagej-macro-plugin | 0.1.3 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| utils | notebook-plugin | 0.4.0 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| utils | stitching-vector-merger-plugin | 0.1.8 | Python | Old | None | None | None | None | None |
| utils | subset-data-plugin | 0.1.8 | Python | Old | None | None | 1.4.7 | None | None |
Visualization
| Family | Plugin | Version | Language | Status | PR | bfio | filepattern | preadator | nyxus |
|---|---|---|---|---|---|---|---|---|---|
| visualization | color-pyramid-builder-plugin | 0.3.3 | Python | Updated | None | 1.x | 1.2.4 | None | None |
| visualization | feature-heatmap-pyramid-plugin | 0.2.0 | Python | Updated | None | 1.x | 1.2.4 | None | None |
| visualization | graph-pyramid-builder-plugin | 1.3.8 | Python | Updated | None | 1.x | 1.2.4 | None | None |
| visualization | image-cluster-annotation-plugin | 0.2.4 | Python | Updated | None | 2.x | 1.2.4 | None | None |
| visualization | precompute-slide-plugin | 1.7.0-dev0 | Python | Peer Review | #484 | 2.1.9 | 2.0.4 | 0.4.0-dev2 | None |
| visualization | precompute-volume-plugin | 1.7.0-dev0 | Python | Old | None | 2.1.9 | 1.4.7 | None | None |
| visualization | tabular-to-microjson-plugin | 0.1.0 | Python | Updated | None | None | 2.0.1 | None | None |
Details
Clustering
k-means-clsutering-plugin
- Version: 0.3.2-dev
- Language: Python
- Status: Updated
- bfio: None
- filepattern: 2.0.0
- preadator: None
- nyxus: 0.5.0
K-NN
Distributed-Memory
- Version: None
- Language: C++
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Shared-Memory-GPU
- Version: 0.1.0
- Language: Cuda
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Shared-Memory-OpenMP
- Version: 0.1.0
- Language: C++
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Shared-Memory-Serial
- Version: 0.1.0
- Language: C++
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
feature-subsetting-plugin
- Version: 0.1.11
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.5
- preadator: None
- nyxus: None
hdbscan-clustering-plugin
- Version: 0.4.7
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
outlier-removal-plugin
- Version: 0.2.5
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Dimension Reduction
PCA
Distributed-Memory
- Version: Unknown
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Shared-Memory
- Version: 0.1.3
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
UMAP
Shared-Memory-GPU
- Version: 0.1.0
- Language: C++/Cuda
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Shared-Memory-OpenMP
- Version: 0.1.6
- Language: C++
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
Features
feature-segmentation-eval
- Version: 0.2.3
- Language: Python
- Status: Updated
- bfio: None
- filepattern: 2.0.1
- preadator: None
- nyxus: None
nyxus-plugin
- Version: 0.1.3
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: 0.2.0
- nyxus: 0.4.0
pixel-segmentation-eval
- Version: 0.1.10
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 2.0.1
- preadator: None
- nyxus: None
csv-statistics-plugin
- Version: 0.2.1
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: None
- nyxus: None
feature-extraction-plugin
- Version: 0.12.2
- Language: Python
- Status: Old
- bfio: Unknown
- filepattern: 1.4.4
- preadator: None
- nyxus: None
imagenet-model-featurization-plugin
- Version: 0.1.3
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: None
- preadator: None
- nyxus: None
object-spectral-featurization-plugin
- Version: 0.1.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: None
- preadator: None
- nyxus: None
region-segmentation-eval
- Version: 0.2.3
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 2.0.1
- preadator: None
- nyxus: None
Formats
file-renaming-plugin
- Version: 0.2.0
- Language: Python
- Status: Updated
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
label-to-vector-plugin
- Version: 0.7.0-dev30
- Language: Python
- Status: Peer Review
- PR: #450
- bfio: 2.1.9
- filepattern: 2.0.1
- preadator: None
- nyxus: None
ome-converter-plugin
- Version: 0.3.0
- Language: Python
- Status: Peer Review
- PR: #486
- bfio: 2.1.9
- filepattern: test-2.2.7
- preadator: None
- nyxus: None
czi-extract-plugin
- Version: 1.1.1
- Language: Python
- Status: Old
- bfio: 2.x
- filepattern: None
- preadator: 0.2.0
- nyxus: None
fcs-to-csv-converter-plugin
- Version: 0.2.5
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
feather-to-tabular-plugin
- Version: 0.1.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imaris-parser-plugin
- Version: 0.3.3
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
multichannel-tiff-plugin
- Version: 0.2.3
- Language: Python
- Status: Old
- bfio: 1.x
- filepattern: 1.2.4
- preadator: None
- nyxus: None
tabular-to-feather-plugin
- Version: 0.1.4
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: None
- nyxus: None
tiledtiff-converter-plugin
- Version: 1.1.2
- Language: Java
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
vector-to-label-plugin
- Version: 0.7.0-dev34
- Language: Python
- Status: Peer Review
- PR: #450
- bfio: 2.1.9
- filepattern: 2.0.1
- preadator: None
- nyxus: None
Regression
basic-flatfield-estimation-plugin
- Version: 2.0.0
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 2.0.0
- preadator: None
- nyxus: None
theia-bleedthrough-estimation-plugin
- Version: 0.5.0-dev0
- Language: Python
- Status: Peer Review
- PR: #451
- bfio: 2.3.1-dev0
- filepattern: 2.0.1
- preadator: None
- nyxus: None
Segmentation
aics-classic-seg-plugin
- Version: 0.1.11
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
cell-nuclei-segmentation
- Version: 0.1.4
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
imagej-threshold-apply-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-huang-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-ij1-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-intermodes-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-isodata-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-li-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-maxentropy-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-maxlikelyhood-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-mean-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-minerror-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-minimum-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-moments-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-otsu-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-percentile-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-renyientropy-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-rosin-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-shanbhag-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-triangle-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-threshold-yen-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
smp-training-plugin
- Version: 0.5.11
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
z01-segmentation-plugin
- Version: 0.2.0
- Language: Python
- Status: Old
- bfio: 2.x
- filepattern: None
- preadator: None
- nyxus: None
Transforms
recycle-vector-plugin
- Version: 1.5.0
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: None
- nyxus: None
Images
apply-flatfield-plugin
- Version: 2.0.0-dev8
- Language: Python
- Status: Peer Review
- PR: #443
- bfio: 2.1.9
- filepattern: 2.0.0
- preadator: None
- nyxus: None
image-assembler-plugin
image-calculator-plugin
- Version: 0.2.0
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
lumos-bleedthrough-correction-plugin
- Version: 0.1.0
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 2.0.0
- preadator: None
- nyxus: None
montage-plugin
- Version: 0.5.0
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 2.0.0
- preadator: None
- nyxus: None
autocropping-plugin
- Version: 1.0.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
binary-operations-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 1.x
- filepattern: 1.4.7
- preadator: None
- nyxus: None
ftl-label-plugin
- Version: 0.3.10
- Language: Python/CPython/Rust
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
image-registration-plugin
- Version: 0.3.5
- Language: Python
- Status: Old
- bfio: 1.x
- filepattern: 1.2.4
- preadator: None
- nyxus: None
imagej-deconvolve-richardsonlucy-plugin
- Version: 0.4.3
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-deconvolve-richardsonlucytv-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-addpoissonnoise-plugin
- Version: 0.4.4
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-convolve-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-correlate-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-derivativegauss-plugin
- Version: 0.4.4
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-dog-plugin
- Version: 0.3.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-frangivesselness-plugin
- Version: 0.4.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-gauss-plugin
- Version: 0.3.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-partialderivative-plugin
- Version: 0.3.5
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-sobel-plugin
- Version: 0.3.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-filter-tubeness-plugin
- Version: 0.3.8
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-image-integral-plugin
- Version: 0.3.2
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-image-invert-plugin
- Version: 0.4.0
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
intensity-projection-plugin
- Version: 0.1.9
- Language: Python
- Status: Old
- bfio: 2.0.5
- filepattern: None
- preadator: 0.2.0
- nyxus: None
rolling-ball-plugin
- Version: 1.1.0-dev0
- Language: Python
- Status: Peer Review
- PR: #429
- bfio: 2.1.9
- filepattern: None
- preadator: None
- nyxus: None
stack-z-slice-plugin
- Version: 1.2.4
- Language: Python
- Status: Old
- bfio: 2.x
- filepattern: 1.4.7
- preadator: 0.2.0
- nyxus: None
roi-relabel-plugin
- Version: 0.2.2
- Language: Python
- Status: Updated
- bfio: 2.1.9
- filepattern: 2.0.0
- preadator: None
- nyxus: None
Tabular
csv-merger-plugin
- Version: 0.4.0
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: None
- nyxus: None
generalized-linear-model-plugin
- Version: 0.2.5
- Language: R
- Status: Unknown
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
tabular-thresholding-plugin
- Version: 0.1.3
- Language: Python
- Status: Updated
- bfio: None
- filepattern: test-2.2.7
- preadator: None
- nyxus: None
Utils
filepattern-generator-plugin
- Version: 0.2.1
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: None
- nyxus: None
csv-collection-merger
- Version: 0.1.1
- Language: sh
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
generic-to-image-collection-plugin
- Version: 0.1.1
- Language: Python
- Status: Old
- bfio: 2.x
- filepattern: 1.4.7
- preadator: None
- nyxus: None
imagej-macro-plugin
- Version: 0.1.3
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
notebook-plugin
- Version: 0.4.0
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
stitching-vector-merger-plugin
- Version: 0.1.8
- Language: Python
- Status: Old
- bfio: None
- filepattern: None
- preadator: None
- nyxus: None
subset-data-plugin
- Version: 0.1.8
- Language: Python
- Status: Old
- bfio: None
- filepattern: 1.4.7
- preadator: None
- nyxus: None
Visualization
color-pyramid-builder-plugin
- Version: 0.3.3
- Language: Python
- Status: Updated
- bfio: 1.x
- filepattern: 1.2.4
- preadator: None
- nyxus: None
feature-heatmap-pyramid-plugin
- Version: 0.2.0
- Language: Python
- Status: Updated
- bfio: 1.x
- filepattern: 1.2.4
- preadator: None
- nyxus: None
graph-pyramid-builder-plugin
- Version: 1.3.8
- Language: Python
- Status: Updated
- bfio: 1.x
- filepattern: 1.2.4
- preadator: None
- nyxus: None
image-cluster-annotation-plugin
- Version: 0.2.4
- Language: Python
- Status: Updated
- bfio: 2.x
- filepattern: 1.2.4
- preadator: None
- nyxus: None
precompute-slide-plugin
- Version: 1.7.0-dev0
- Language: Python
- Status: Peer Review
- PR: #484
- bfio: 2.1.9
- filepattern: 2.0.4
- preadator: 0.4.0-dev2
- nyxus: None
precompute-volume-plugin
- Version: 1.7.0-dev0
- Language: Python
- Status: Old
- bfio: 2.1.9
- filepattern: 1.4.7
- preadator: None
- nyxus: None
tabular-to-microjson-plugin
- Version: 0.1.0
- Language: Python
- Status: Updated
- bfio: None
- filepattern: 2.0.1
- preadator: None
- nyxus: None
Metadata
Metadata
Labels
bugSomething isn't workingSomething isn't workingfeatureNew feature or requestNew feature or request