Add feature maps (fmaps) mode for sliding-kernel feature extraction #1271
Workflow file for this run
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build And Run Test on Mac | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.sha }} | |
| cancel-in-progress: true | |
| env: | |
| BUILD_TYPE: Release | |
| jobs: | |
| Build_and_Run_GTest: | |
| name: Build and Run GoogleTest | |
| runs-on: macos-15-intel | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: anaconda-client-env | |
| miniconda-version: "latest" | |
| python-version: "3.10" | |
| channels: conda-forge | |
| auto-activate-base: false | |
| - name: Install Conda Dependencies | |
| run: | | |
| conda install -y mamba | |
| mamba install -y compilers --file "${{ github.workspace }}/ci-utils/envs/conda_cpp.txt" | |
| - name: Configure CMake | |
| run: > | |
| cmake -B "${{ github.workspace }}" | |
| -DCMAKE_BUILD_TYPE=${{ env.BUILD_TYPE }} | |
| -DBUILD_CLI=ON | |
| -DRUN_GTEST=ON | |
| -DALLEXTRAS=ON | |
| -DCMAKE_PREFIX_PATH="$CONDA_PREFIX" | |
| -DCMAKE_INSTALL_PREFIX="$CONDA_PREFIX" | |
| - name: Build | |
| run: cmake --build "${{ github.workspace }}" --config "${{ env.BUILD_TYPE }}" --parallel 2 | |
| - name: Run GTest Suite | |
| working-directory: ${{ github.workspace }} | |
| run: ./tests/runAllTests -C "${{ env.BUILD_TYPE }}" | |
| Build_and_Run_PyTest: | |
| name: Build and Run PyTest | |
| runs-on: macos-15-intel | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: anaconda-client-env | |
| miniconda-version: "latest" | |
| python-version: "3.10" | |
| channels: conda-forge | |
| auto-activate-base: false | |
| - name: Install Conda Dependencies | |
| run: | | |
| conda install -y mamba | |
| mamba install -y compilers pytest bfio \ | |
| --file "${{ github.workspace }}/ci-utils/envs/conda_cpp.txt" \ | |
| --file "${{ github.workspace }}/ci-utils/envs/conda_py.txt" | |
| - name: Install Nyxus | |
| working-directory: ${{ github.workspace }} | |
| run: > | |
| CMAKE_ARGS="-DCMAKE_PREFIX_PATH=$CONDA_PREFIX | |
| -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX | |
| -DALLEXTRAS=ON" | |
| python -m pip install . -vv | |
| - name: Run PyTest | |
| working-directory: ${{ github.workspace }} | |
| run: python -m pytest tests/python/ -vv |