make_test.yml

name: Build GPEC

on:
  workflow_dispatch:
  pull_request:
    branches: [develop]

jobs:
  build-netcdf-gfortran:
    runs-on: ubuntu-latest
    env:
      PREFIX: ${{ github.workspace }}/deps
      FC: gfortran

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Restore NetCDF-gfortran cache
        id: netcdf-cache
        uses: actions/cache@v4
        with:
          path: ${{ env.PREFIX }}
          key: ${{ runner.os }}-netcdf-gfortran-v1

      - name: Install dependencies
        if: steps.netcdf-cache.outputs.cache-hit != 'true'
        run: |
          sudo rm /var/lib/man-db/auto-update
          sudo apt update
          sudo apt install -y build-essential gfortran m4 curl libhdf5-dev libnetcdf-dev

      - name: Build NetCDF-Fortran 4.6.1
        if: steps.netcdf-cache.outputs.cache-hit != 'true'
        run: |
          mkdir -p $PREFIX/src
          cd $PREFIX/src
          curl -L -o netcdf-fortran.tar.gz https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.6.1.tar.gz
          tar xf netcdf-fortran.tar.gz
          cd netcdf-fortran-4.6.1

          export CPPFLAGS="-I/usr/include/hdf5/serial"
          export LDFLAGS="-L/usr/lib/x86_64-linux-gnu/hdf5/serial"
          export LIBS="-lnetcdf -lhdf5 -lhdf5_hl -lm -lz"

          echo "::group::Configure log"
          ./configure --prefix=$PREFIX --enable-shared --disable-static || (cat config.log && exit 1)
          echo "::endgroup::"

          make -j$(nproc)
          make check
          make install

      - name: Confirm cache result
        run: |
          if [ "${{ steps.netcdf-cache.outputs.cache-hit }}" = "true" ]; then
            echo "Cache found. Skipping build."
          else
            echo "Cache not found. Built from source."
          fi

      - name: Confirm all shared libs
        run: |
          ls -lh $PREFIX/lib
          ls -lh $PREFIX/include

  build-netcdf-ifort:
    runs-on: ubuntu-latest
    env:
      PREFIX: ${{ github.workspace }}/deps
      ONEAPI_ROOT: /opt/intel/oneapi
      FC: ifort
      
    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Try restore NetCDF-ifort cache
        id: netcdf-cache
        uses: actions/cache@v4
        with:
          path: ${{ env.PREFIX }}
          key: ${{ runner.os }}-netcdf-ifort-v1

      - name: Install Intel oneAPI + deps
        if: steps.netcdf-cache.outputs.cache-hit != 'true'
        run: |
          sudo rm /var/lib/man-db/auto-update
          wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
          echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
          sudo apt update
          sudo apt install -y curl gnupg lsb-release build-essential m4 curl libhdf5-dev libnetcdf-dev
          sudo apt install -y intel-oneapi-compiler-fortran-2022.2.1

      - name: Source oneAPI and check ifort
        if: steps.netcdf-cache.outputs.cache-hit != 'true'
        shell: bash
        run: |
          source /opt/intel/oneapi/setvars.sh
          echo "Which ifort: $(which ifort)"
          ifort --version

      - name: Build NetCDF-Fortran 4.6.1 with ifort
        if: steps.netcdf-cache.outputs.cache-hit != 'true'
        run: |
          source /opt/intel/oneapi/setvars.sh
          
          mkdir -p $PREFIX/src
          cd $PREFIX/src
          curl -L -o netcdf-fortran.tar.gz https://github.com/Unidata/netcdf-fortran/archive/refs/tags/v4.6.1.tar.gz
          tar xf netcdf-fortran.tar.gz
          cd netcdf-fortran-4.6.1

          export CPPFLAGS="-I/usr/include -I/usr/include/hdf5/serial"
          export LDFLAGS="-L/usr/lib -L/usr/lib/x86_64-linux-gnu/hdf5/serial"
          export LIBS="-lnetcdf -lhdf5 -lhdf5_hl -lm -lz"

          echo "::group::Configure log"
          ./configure --prefix=$PREFIX --enable-shared --disable-static || (cat config.log && exit 1)
          echo "::endgroup::"

          make -j$(nproc)
          make check
          make install

      - name: Confirm cache result
        run: |
          if [ "${{ steps.netcdf-cache.outputs.cache-hit }}" = "true" ]; then
            echo "Cache found. Skipping build."
          else
            echo "Cache not found. Built from source."
          fi
          
      - name: Confirm all shared libs
        run: |
          ls -lh $PREFIX/lib
          ls -lh $PREFIX/include
          
  make_gpec_gfortran:
    runs-on: ubuntu-latest
    needs: build-netcdf-gfortran
    env:
      PREFIX: ${{ github.workspace }}/deps

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Restore NetCDF-gfortran cache
        uses: actions/cache@v4
        with:
          path: ${{ env.PREFIX }}
          key: ${{ runner.os }}-netcdf-gfortran-v1

      - name: Rewrite .gitmodules to use HTTPS
        run: |
          git config --file .gitmodules submodule.harvest.url https://github.com/gafusion/harvest_client.git
          git submodule sync
          git submodule update --init --recursive
          
      - name: Install Dependencies
        run: |
          sudo rm /var/lib/man-db/auto-update
          sudo apt update
          sudo apt install -y gfortran libopenblas-dev libx11-dev libnetcdf-dev

      - name: Compile
        run: |
          cd install
          export NETCDF_C_HOME=/usr
          export NETCDF_FORTRAN_HOME=$PREFIX
          export LAPACKHOME=/usr
          export FC=/usr/bin/gfortran
          export CC=/usr/bin/gcc
          export FFLAGS='-fallow-argument-mismatch -O0 -Wall -Wextra -fcheck=all,no-array-temps -fbacktrace -finit-real=snan -finit-integer=-9999 -fstack-protector-all -fsanitize=bounds -Wno-array-temporaries -Wno-unused-variable -Wno-unused-dummy-argument -Wno-compare-reals -Wno-unused-parameter -Wno-unused-label -fno-omit-frame-pointer -frecord-marker=4 -gdwarf-4 -ffloat-store -fbounds-check'
          make

      - name: Run Soloviev ideal example
        run: |
          export GPECHOME=$(pwd)
          export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
          cd docs/examples/regression_solovev_ideal_example
          ulimit -s unlimited
          ../../../bin/dcon && ../../../bin/gpec && ../../../bin/stride && ../../../bin/pentrc

      - name: Run Soloviev kinetic example
        run: |
          export GPECHOME=$(pwd)
          export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
          cd docs/examples/regression_solovev_kinetic_example
          ulimit -s unlimited
          ../../../bin/dcon && ../../../bin/gpec && ../../../bin/pentrc
      - name: Run Soloviev resistive example
        run: |
          export GPECHOME=$(pwd)
          export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
          cd docs/examples/regression_solovev_resistive_example
          ulimit -s unlimited
          ../../../bin/rdcon && ../../../bin/rmatch && ../../../bin/gpec && ../../../bin/stride

  make_gpec_ifort:
    runs-on: ubuntu-latest
    needs: build-netcdf-ifort
    env:
      PREFIX: ${{ github.workspace }}/deps
      ONEAPI_ROOT: /opt/intel/oneapi

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Restore NetCDF-ifort cache
        uses: actions/cache@v4
        with:
          path: ${{ env.PREFIX }}
          key: ${{ runner.os }}-netcdf-ifort-v1

      - name: Install Intel oneAPI + deps
        run: |
          sudo rm /var/lib/man-db/auto-update
          wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | sudo tee /usr/share/keyrings/oneapi-archive-keyring.gpg > /dev/null
          echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list
          sudo apt update
          sudo apt install -y curl gnupg lsb-release build-essential m4 curl libhdf5-dev libnetcdf-dev
          sudo apt install -y intel-oneapi-compiler-fortran-2022.2.1 intel-oneapi-mkl-2022.2.1 libx11-dev libnetcdf-dev

      - name: Source oneAPI and check ifort and icx
        shell: bash
        run: |
          source /opt/intel/oneapi/setvars.sh
          echo "Which ifort: $(which ifort)"
          ifort --version

      - name: Rewrite .gitmodules to use HTTPS
        run: |
          git config --file .gitmodules submodule.harvest.url https://github.com/gafusion/harvest_client.git
          git submodule sync
          git submodule update --init --recursive

      - name: Compile
        run: |
          source /opt/intel/oneapi/setvars.sh
          cd install
          export NETCDF_C_HOME=/usr
          export NETCDF_FORTRAN_HOME=$PREFIX
          export MKLROOT=/opt/intel/oneapi/mkl/2022.2.1
          export FC=/opt/intel/oneapi/compiler/2022.2.1/linux/bin/intel64/ifort
          export CC=/usr/bin/gcc
          export FFLAGS='-O0 -warn all -check all -check noarg_temp_created -traceback -fpe3 -fstack-protector -fopenmp'
          make

      - name: Run Soloviev ideal example
        run: |
          source /opt/intel/oneapi/setvars.sh
          export GPECHOME=$(pwd)
          export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
          export FOR_DISABLE_STACK_TRACE=TRUE
          cd docs/examples/regression_solovev_ideal_example
          ulimit -s unlimited
          ../../../bin/dcon && ../../../bin/gpec && ../../../bin/stride && ../../../bin/pentrc

      - name: Run Soloviev kinetic example
        run: |
          source /opt/intel/oneapi/setvars.sh
          export GPECHOME=$(pwd)
          export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
          export FOR_DISABLE_STACK_TRACE=TRUE
          cd docs/examples/regression_solovev_kinetic_example
          ulimit -s unlimited
          ../../../bin/dcon && ../../../bin/gpec && ../../../bin/pentrc
      - name: Run Soloviev resistive example
        run: |
          source /opt/intel/oneapi/setvars.sh
          export GPECHOME=$(pwd)
          export LD_LIBRARY_PATH=$PREFIX/lib:$LD_LIBRARY_PATH
          export FOR_DISABLE_STACK_TRACE=TRUE
          cd docs/examples/regression_solovev_resistive_example
          ulimit -s unlimited
          ../../../bin/rdcon && ../../../bin/rmatch && ../../../bin/gpec && ../../../bin/stride