Merge branch 'dev' into fix-issue-8603

Signed-off-by: ytl0623 <[email protected]>

Author: ytl0623

.github/workflows/chatops.yml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: dispatch
-        uses: peter-evans/[email protected].0
+        uses: peter-evans/[email protected].2
         with:
           token: ${{ secrets.PR_MAINTAIN }}
           reaction-token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/cron-ngc-bundle.yml

@@ -26,7 +26,7 @@ jobs:
       id: pip-cache
       run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ~/.cache/pip

.github/workflows/docker.yml

@@ -37,7 +37,7 @@ jobs:
           python setup.py build
           cat build/lib/monai/_version.py
       - name: Upload version
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v6
         with:
           name: _version.py
           path: build/lib/monai/_version.py

.github/workflows/integration.yml

@@ -22,7 +22,7 @@ jobs:
       id: pip-cache
       run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |
@@ -98,7 +98,7 @@ jobs:
       id: pip-cache
       run: echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |

.github/workflows/pythonapp-min.yml

@@ -46,7 +46,7 @@ jobs:
         echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
       shell: bash
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ${{ steps.pip-cache.outputs.dir }}
@@ -96,7 +96,7 @@ jobs:
         echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
       shell: bash
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ${{ steps.pip-cache.outputs.dir }}
@@ -145,7 +145,7 @@ jobs:
         echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
       shell: bash
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ${{ steps.pip-cache.outputs.dir }}

.github/workflows/release.yml

@@ -66,7 +66,7 @@ jobs:
 
     - if: matrix.python-version == '3.9' && startsWith(github.ref, 'refs/tags/')
       name: Upload artifacts
-      uses: actions/upload-artifact@v5
+      uses: actions/upload-artifact@v6
       with:
         name: dist
         path: dist/
@@ -109,7 +109,7 @@ jobs:
           python setup.py build
           cat build/lib/monai/_version.py
       - name: Upload version
-        uses: actions/upload-artifact@v5
+        uses: actions/upload-artifact@v6
         with:
           name: _version.py
           path: build/lib/monai/_version.py

.github/workflows/setupapp.yml

@@ -35,7 +35,7 @@ jobs:
         echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
       if: ${{ startsWith(github.ref, 'refs/heads/dev') }}
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |
@@ -95,7 +95,7 @@ jobs:
       run: |
         echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |
@@ -136,7 +136,7 @@ jobs:
       run: |
         echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: |

.github/workflows/weekly-preview.yml

@@ -21,7 +21,7 @@ jobs:
       run: |
         echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
     - name: cache for pip
-      uses: actions/cache@v4
+      uses: actions/cache@v5
       id: cache
       with:
         path: ~/.cache/pip

.pre-commit-config.yaml

@@ -30,22 +30,11 @@ repos:
     rev: v0.7.0
     hooks:
     -   id: ruff
-        args:
-        - --fix
-
-  - repo: https://github.com/asottile/pyupgrade
-    rev: v3.19.0
-    hooks:
-      - id: pyupgrade
-        args: [--py39-plus, --keep-runtime-typing]
-        name: Upgrade code with exceptions
+        args: ["--fix"]
         exclude: |
           (?x)(
               ^versioneer.py|
-              ^monai/_version.py|
-              ^monai/networks/| # avoid typing rewrites
-              ^monai/apps/detection/utils/anchor_utils.py| # avoid typing rewrites
-              ^tests/test_compute_panoptic_quality.py # avoid typing rewrites
+              ^monai/_version.py
           )
 
   - repo: https://github.com/asottile/yesqa

monai/apps/auto3dseg/bundle_gen.py

@@ -396,7 +396,7 @@ def _download_algos_url(url: str, at_path: str) -> dict[str, dict[str, str]]:
         try:
             download_and_extract(url=url, filepath=algo_compressed_file, output_dir=os.path.dirname(at_path))
         except Exception as e:
-            msg = f"Download and extract of {url} failed, attempt {i+1}/{download_attempts}."
+            msg = f"Download and extract of {url} failed, attempt {i + 1}/{download_attempts}."
             if i < download_attempts - 1:
                 warnings.warn(msg)
                 time.sleep(i)