PIL Reader rotate image

[ademyanchuk]

Hi, thanks for the great library!

Why PILReader in get_data method move axes like this np.moveaxis(np.asarray(i), 0, 1)
It actually rotates the original image 90 degrees. Did I miss something?

Thanks,
Alexey

[wyli]

That's mainly for interoperability. We’d like to ensure that the monai reader and writers with different backends (itk/pil/nibabel) use the same convention.

[ademyanchuk]

Thanks. That means, after training predicted segmentations will be also rotated, and one should rotate it back to comply to original image, right?