AttributeError: module 'monai.transforms' has no attribute 'EnsureTyped'

[jakubMitura14]

Hello I am trying to use EnsureTyped transform Hovewer I get error like below

AttributeError: module 'monai.transforms' has no attribute 'EnsureTyped'

in code

from monai.transforms import *

val_transforms = Compose(
    [
        LoadImaged(keys=["image", "label"]),
        EnsureChannelFirstd(keys=["image", "label"]),
        Spacingd(keys=["image", "label"], pixdim=(
            1.0, 1.0, 1.0), mode=("bilinear", "nearest")),
        Orientationd(keys=["image", "label"], axcodes="RAS"),
        CropForegroundd(keys=["image", "label"], source_key="image"),
        EnsureTyped(keys=["image", "label"]),

    ]
)

configuration info

from monai.config import print_config
print_config()

MONAI version: 0.5.dev2111
Numpy version: 1.21.5
Pytorch version: 1.10.2+cu113
MONAI flags: HAS_EXT = False, USE_COMPILED = False
MONAI rev id: 45d2249b3c388b4e7df7253c77759f6450dfb222

Optional dependencies:
Pytorch Ignite version: 0.4.2
Nibabel version: 3.2.2
scikit-image version: 0.19.2
Pillow version: 9.0.1
Tensorboard version: 2.8.0
gdown version: 4.4.0
TorchVision version: 0.11.3+cu113
ITK version: 5.2.1
tqdm version: 4.63.0
lmdb version: NOT INSTALLED or UNKNOWN VERSION.
psutil version: NOT INSTALLED or UNKNOWN VERSION.

Other coonfiguration data
python 3.7

I installed monai and pytorch using commands below

!pip3 install torch==1.10.2+cu113 torchvision==0.11.3+cu113 torchaudio===0.10.2+cu113 -f https://download.pytorch.org/whl/cu113/torch_stable.html

!pip install -q "monai-weekly[all]"

when invoking

import monai
print(monai.__file__)

I get

c:\users\jakub\pycharmprojects\pythonproject7\venv\lib\site-packages\monai\__init__.py

inside the file I have

# Copyright 2020 - 2021 MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#     http://www.apache.org/licenses/LICENSE-2.0
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import os
import sys

from ._version import get_versions

PY_REQUIRED_MAJOR = 3
PY_REQUIRED_MINOR = 6

version_dict = get_versions()
__version__ = version_dict.get("version", "0+unknown")
__revision_id__ = version_dict.get("full-revisionid", None)
del get_versions, version_dict

__copyright__ = "(c) 2020 - 2021 MONAI Consortium"

__basedir__ = os.path.dirname(__file__)

if not (sys.version_info.major == PY_REQUIRED_MAJOR and sys.version_info.minor >= PY_REQUIRED_MINOR):
    raise RuntimeError(
        "MONAI requires Python {}.{} or higher. But the current Python is: {}".format(
            PY_REQUIRED_MAJOR, PY_REQUIRED_MINOR, sys.version
        ),
    )

from .utils.module import load_submodules  # noqa: E402

# handlers_* have some external decorators the users may not have installed
# *.so files and folder "_C" may not exist when the cpp extensions are not compiled
excludes = "(^(monai.handlers))|((\\.so)$)|(^(monai._C))"

# load directory modules only, skip loading individual files
load_submodules(sys.modules[__name__], False, exclude_pattern=excludes)

# load all modules, this will trigger all export decorations
load_submodules(sys.modules[__name__], True, exclude_pattern=excludes)

__all__ = [
    "apps",
    "config",
    "data",
    "engines",
    "handlers",
    "inferers",
    "losses",
    "metrics",
    "networks",
    "optimizers",
    "transforms",
    "utils",
    "visualize",
]
__commit_id__ = "e17e1586947930ac10f8dbc7c1e811e5862cd41f"

What am I doing wrong?

[rijobro]

I think you're missing the first line of the output, could you include it? Mine looks like this:

MONAI version: 0.8.1+145.g82ec2fef
Numpy version: 1.21.2
Pytorch version: 1.10.1
MONAI flags: HAS_EXT = False, USE_COMPILED = False
MONAI rev id: 82ec2fef6e0636a0290a454b82a262d6871a84d5
MONAI __file__: /Users/rich/Documents/Code/MONAI/monai/__init__.py

Optional dependencies:
Pytorch Ignite version: 0.4.8
...

[jakubMitura14]

Thanks !! I updated main post with the result of monai-file

The first missing line is MONAI version: 0.5.dev2111

It is possible that I have multiple versions as I installed it and reinstalled multiple times - trying to make it work with dependencies needed for Hausdorff distance.

For now It is my only python project on PC would you advise to uninstall and reinstall python?

[rijobro]

0.5 is pretty old, I would certainly uninstall and reinstall. When you uninstall, I would confirm that another version is not being picked up by trying to do import monai and checking that it fails. If it succeeds, then use import monai; print(monai.__file__) to figure out where that version is. Based on your current output, it looks like your current version might have been installed by pycharm (or is in a pycharm-created environment at least).

[jakubMitura14]

Hmm I removed python, reinstalled python 3.79 but When instylling via pip command like below I get still the same version of monai

!pip3 install torch==1.10.2+cu113 torchvision==0.11.3+cu113 torchaudio===0.10.2+cu113 -f https://download.pytorch.org/whl/cu113/torch_stable.html
#%%

!pip install -q "monai-weekly[all]"

I am invoking it in jupyter notebook in pycharm

import monai
print(monai.__file__)

gives

c:\users\jakub\pycharmprojects\pythonproject8\venv\lib\site-packages\monai\__init__.py

so path to fresh python project I created

[rijobro]

You say you removed python, but the path still points to a pycharm path, I'm not convinced that you deleted everything as you intended.

[jakubMitura14]

You are right now this problem is resolved thank You !!