-
Notifications
You must be signed in to change notification settings - Fork 1.2k
auto3dseg autorunner tensor mismatch error #7433
Replies: 1 comment · 8 replies
-
Hi @bilalcodehub, you may add a Hi @dongyang0122, is there any reason we don't add this transform to ensure the same shape in the suto3dseg? |
Beta Was this translation helpful? Give feedback.
All reactions
-
Hi @bilalcodehub,
I didn't get the point here, could you explain on this further? Thanks. |
Beta Was this translation helpful? Give feedback.
All reactions
-
Thanks @KumoLiu: I'm currently facing difficulty running the
I couldn't figure out what is wrong with this code. I would greatly appreciate any guidance to fix this issue and any reading materials explaining how to add these transforms manually. Thank you for your assistance. |
Beta Was this translation helpful? Give feedback.
All reactions
-
I think you should use the dictionary version, |
Beta Was this translation helpful? Give feedback.
All reactions
-
And didn't see 'pad' mode here. Please check the doc-string for instructions, thanks. MONAI/monai/transforms/croppad/dictionary.py Line 1178 in ff43028
|
Beta Was this translation helpful? Give feedback.
All reactions
-
Thanks for the update, @KumoLiu. I've tried running the auto3dseg for the dints model with folds=1, and I've implemented the transform at the end of the transform_train.yaml file as you described (see below). While I no longer encounter the transform validation error, I'm still facing a dimension mismatch error:
The new error message is given below:
Do you have any insights into why the proposed transform is not getting applied and how this can be fixed? Many thanks and kind regards, |
Beta Was this translation helpful? Give feedback.
Uh oh!
There was an error while loading. Please reload this page.
Uh oh!
There was an error while loading. Please reload this page.
-
Hello everyone,
I intend to utilize
autorunner
for the 3D segmentation of lesions from CT scans.I have formatted the data as requested. Please find the contents below, which outline the paths for

testing
andtraining
keys inside thedatalist_file.json
file:training
testing

I use the code below to run the model:
The data analyzer successfully generates the stats file. You can access the file here: https://drive.google.com/file/d/1hv2QImkLAdGYFOKWU1SSHvkDG7zs_qNC/view?usp=sharing
However, I encounter the following tensor mismatch error when
auto3dseg
initiates the training. It appears to be related to issues with augmentation, as batches are not formed as anticipated. See the log below:Could someone please provide guidance on what might be incorrect with my configurations?
Any assistance to resolve this issue would be greatly appreciated.
Thank you and
Kind regards,
Bilal
Beta Was this translation helpful? Give feedback.
All reactions