You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
- installing cellprofiler from source is only required if the plugin
uses packages not already available within cellprofiler
Signed-off-by: Nodar Gogoberidze <[email protected]>
Copy file name to clipboardExpand all lines: plugins/cellprofiler/README.md
+10-7Lines changed: 10 additions & 7 deletions
Display the source diff
Display the rich diff
Original file line number
Diff line number
Diff line change
@@ -29,16 +29,19 @@ Users can find supported applications in the [sample-apps](../../sample-apps/vis
29
29
30
30
### Installing CellProfiler
31
31
32
-
To use MONAILabel with CellProfiler, you first need to install CellProfiler from source code following the installation part of [CellProfiler WiKi](https://github.com/CellProfiler/CellProfiler/wiki). Once you have CellProfiler installed, you can install the MONAILabel plugin as shown in the `Install MONAI Label Extension` part.
32
+
Since this plugin does not require any external dependencies, except those already available in CellProfiler itself, users may choose to download and use a pre-built version, [available here](https://cellprofiler.org/releases).
33
33
34
-
Please note these tips when installing the software:
35
-
1. After cloned the source code, you must switch to a specific version tag of the repo to start installation.
36
-
1. For Macbooks with Apple Silicon, please note [this issue](https://github.com/CellProfiler/CellProfiler/issues/4932) before you start to install.
37
-
1. Before actually running the command `pip install -e .`, you may need to install numpy if it doesn't exist in your environment.
34
+
Alternatively, you may install CellProfiler from source code following the installation part of [CellProfiler WiKi](https://github.com/CellProfiler/CellProfiler/wiki).
35
+
36
+
Once you have CellProfiler installed, you can install the MONAILabel plugin as shown in the `Install MONAI Label Extension` part.
38
37
39
38
### Install MONAI Label Extension
40
-
1. Save the runvista2d.py file to a local path.
41
-
1. Start CellProfiler from CLI, open the `File-->preferences` option and fill in the `CellProfiler plugin directory` parameter with your local path.
39
+
1. Save the `runvista2d.py` file to a local path.
40
+
1. Start CellProfiler by opening the application or .exe (if using pre-built) or by launching from CLI (if installed from source), open the `File-->preferences` option and fill in the `CellProfiler plugin directory` parameter with your local path.
41
+
42
+
Alternatively,
43
+
1. Download/Clone the official CellProfiler-plugins repository [available here](https://github.com/CellProfiler/CellProfiler-plugins), which contains `runvista2d.py`.
44
+
1. Start CellProfiler by opening the application or .exe (if using pre-built) or by launching from CLI (if installed from source), open the `File-->preferences` option and fill in the `CellProfiler plugin directory` parameter with the path to the `<path>/<to>/CellProfiler-Plugins/active_plugins`.
0 commit comments