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Add request info to return config label indexes (#1524)
* Add request info to return config label indexes Signed-off-by: Andres <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update segmentation.py Change argument name Signed-off-by: Andres Diaz-Pinto <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update deepedit.py Change argument name Signed-off-by: Andres Diaz-Pinto <[email protected]> * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Signed-off-by: Andres <[email protected]> Signed-off-by: Andres Diaz-Pinto <[email protected]> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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2 files changed

+12
-2
lines changed

2 files changed

+12
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lines changed

sample-apps/radiology/lib/infers/deepedit.py

Lines changed: 5 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -119,5 +119,9 @@ def post_transforms(self, data=None) -> Sequence[Callable]:
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AsDiscreted(keys="pred", argmax=True),
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SqueezeDimd(keys="pred", dim=0),
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ToNumpyd(keys="pred"),
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Restored(keys="pred", ref_image="image"),
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Restored(
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keys="pred",
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ref_image="image",
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config_labels=self.labels if data.get("restore_label_idx", False) else None,
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),
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]

sample-apps/radiology/lib/infers/segmentation.py

Lines changed: 7 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -92,5 +92,11 @@ def post_transforms(self, data=None) -> Sequence[Callable]:
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if data and data.get("largest_cc", False):
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t.append(KeepLargestConnectedComponentd(keys="pred"))
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t.append(Restored(keys="pred", ref_image="image"))
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t.append(
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Restored(
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keys="pred",
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ref_image="image",
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config_labels=self.labels if data.get("restore_label_idx", False) else None,
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)
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)
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return t

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