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models/swin_unetr_btcv_segmentation/configs/metadata.json

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"description": "A pre-trained model for volumetric (3D) multi-organ segmentation from CT image",
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"authors": "MONAI team",
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"copyright": "Copyright (c) MONAI Consortium",
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"data_source": "dataset.tar from https://www.synapse.org/#!Synapse:syn3193805/wiki/217752/",
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"data_source": "RawData.zip from https://www.synapse.org/#!Synapse:syn3193805/wiki/217752/",
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"data_type": "nibabel",
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"image_classes": "single channel data, intensity scaled to [0, 1]",
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"label_classes": "multi-channel data,0:background,1:spleen, 2:Right Kidney, 3:Left Kideny, 4:Gallbladder, 5:Esophagus, 6:Liver, 7:Stomach, 8:Aorta, 9:IVC, 10:Portal and Splenic Veins, 11:Pancreas, 12:Right adrenal gland, 13:Left adrenal gland",

models/swin_unetr_btcv_segmentation/docs/README.md

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# Model Overview
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A pre-trained Swin UNETR [1,2] for volumetric (3D) multi-organ segmentation using CT images from Beyond the Cranial Vault (BTCV) Segmentation Challenge dataset [3].
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## Data
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The training data is from the [BTCV dataset](https://www.synapse.org/#!Synapse:syn3193805/wiki/89480/).
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- Target: Multi-organs
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- Task: Segmentation
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- Modality: CT
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- Size: 30 3D volumes (24 Training + 6 Testing)
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The training data is from the [BTCV dataset](https://www.synapse.org/#!Synapse:syn3193805/wiki/89480/) (Please regist in `Synapse` and download the `Abdomen/RawData.zip`).
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The dataset format needs to be redefined using the following commands:
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```
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unzip RawData.zip
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mv RawData/Training/img/ RawData/imagesTr
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mv RawData/Training/label/ RawData/labelsTr
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mv RawData/Testing/img/ RawData/imagesTs
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```
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- Target: Multi-organs
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- Task: Segmentation
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- Modality: CT
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- Size: 30 3D volumes (24 Training + 6 Testing)
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## Training configuration
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The training was performed with at least 32GB-memory GPUs.
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