Project and doc changes to get ready to release 3.1 minor update (#551)

* Tests show that newest MONAI v1.5 is not compatible with Holoscan SDK v3.6

due to MONAI v1.5 limits torch <2.7, and the installed torch 2.6 has an older
version of the cuda12 runtime, libcudart.so.12 at 12.4 which is not compatible
with HSDK v3.6 (CUDA >=12.6.77).

So need to limit HSDK dependency to ~=3.5.0

Signed-off-by: M Q <[email protected]>

* Make Python 3.10 the min version for the code, while still at 3.9 for doc build.

Signed-off-by: M Q <[email protected]>

* Need set holoscan<=3.5 so that doc build with Python 3.9 may work

Signed-off-by: M Q <[email protected]>

* Still need to include Python3.9 for doc build, as temp fix

Signed-off-by: M Q <[email protected]>

* One more fix

Signed-off-by: M Q <[email protected]>

* last one?

Signed-off-by: M Q <[email protected]>

---------

Signed-off-by: M Q <[email protected]>

Author: MMelQin

.github/workflows/pr.yml

@@ -14,10 +14,10 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v2
-      - name: Set up Python 3.9
+      - name: Set up Python 3.10
         uses: actions/setup-python@v2
         with:
-          python-version: "3.9"
+          python-version: "3.10"
       - name: Setup Dev Environment
         run: |
           pip install virtualenv

docs/source/release_notes/index.md

@@ -10,6 +10,7 @@
 ```{toctree}
 :maxdepth: 1
 
+v3.1.0
 v3.0.0
 ```
 ## Version 2.0

notebooks/tutorials/03_segmentation_app.ipynb

@@ -8,7 +8,7 @@ build-backend = "setuptools.build_meta"
 
 [tool.black]
 line-length = 120
-target-version = ['py38', 'py39', 'py310', 'py311', 'py312']
+target-version = ['py39', 'py310', 'py311', 'py312', 'py313']
 include = '\.pyi?$'
 exclude = '''
 (

pyproject.toml

@@ -1,5 +1,5 @@
-holoscan~=3.0
-holoscan-cli~=3.0
+holoscan<=3.5.0
+holoscan-cli<=3.5.0
 numpy>=1.21.6
 colorama>=0.4.1
 tritonclient[all]>=2.53.0

requirements.txt

@@ -24,8 +24,8 @@ python_requires = >=3.9, <3.14
 #     cucim
 install_requires =
     numpy>=1.21.6
-    holoscan~=3.0
-    holoscan-cli~=3.0
+    holoscan<=3.5.0
+    holoscan-cli<=3.5.0
     colorama>=0.4.1
     tritonclient[all]>=2.53.0
     typeguard>=3.0.0