Merge pull request #30 from Guangzhen-Jin/app_domain

Move scripts and modulefiles out of docs folder.

Author: Guangzhen-Jin

.github/workflows/rebuild_on_module_change.yml

@@ -5,7 +5,7 @@ on:
     branches:
       - main
     paths:
-      - 'docs/software_datasets/modulefiles/**'
+      - 'modulefiles/**'
 
 permissions:
   contents: write
@@ -15,7 +15,7 @@ jobs:
     runs-on: ubuntu-latest
     defaults:
       run:
-        working-directory: docs/software_datasets/scripts
+        working-directory: tools
 
     steps:
       - name: Checkout repository
@@ -44,13 +44,13 @@ jobs:
           GITHUB_APP_TOKEN: ${{ steps.app-token.outputs.token }}
         run: |
           # Stage any modified files BEFORE pulling to avoid unstaged changes
-          git add ../software/apps_md ../software/app_catalog.md ../software/index.md || true
+          git add ../docs/software_datasets/software/apps_md ../docs/software_datasets/software/app_catalog.md ../docs/software_datasets/software/index.md || true
           
           # Pull and rebase with staged changes
           git pull origin ${{ github.ref_name }} --rebase || git pull origin ${{ github.ref_name }}
 
           # Re-stage in case rebase changed files
-          git add ../software/apps_md ../software/app_catalog.md ../software/index.md || true
+          git add ../docs/software_datasets/software/apps_md ../docs/software_datasets/software/app_catalog.md ../docs/software_datasets/software/index.md || true
           
           git diff --cached --quiet && echo "No changes to commit" && exit 0
           git commit -m "Auto-update app catalog and markdown files"