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lines changed Original file line number Diff line number Diff line change 2525
2626 steps :
2727 - name : Checkout code
28- uses : actions/checkout@v4
28+ uses : actions/checkout@v5
2929
3030 - name : Setup micromamba
3131 uses : mamba-org/setup-micromamba@v2
Original file line number Diff line number Diff line change 88
99repos :
1010- repo : https://github.com/pre-commit/pre-commit-hooks
11- rev : v5 .0.0
11+ rev : v6 .0.0
1212 hooks :
1313 - id : check-merge-conflict
1414 - id : check-added-large-files
1717# Run ruff to lint and format
1818- repo : https://github.com/astral-sh/ruff-pre-commit
1919 # Ruff version.
20- rev : v0.12.2
20+ rev : v0.13.3
2121 hooks :
2222 # Run the linter.
2323 - id : ruff
4444
4545 # Format Snakemake rule / workflow files
4646- repo : https://github.com/snakemake/snakefmt
47- rev : v0.11.0
47+ rev : v0.11.2
4848 hooks :
4949 - id : snakefmt
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