From 633361c3e79f03dfc3766e89e31f4b11a8786d6c Mon Sep 17 00:00:00 2001
From: Thomas Holder <thomas@thomas-holder.de>
Date: Sun, 22 Jun 2025 20:44:31 +0200
Subject: [PATCH 1/5] Introduce pytest

Co-authored-by: Pedro Lacerda <pslacerda@gmail.com>
---
 pytest.ini | 8 ++++++++
 1 file changed, 8 insertions(+)
 create mode 100644 pytest.ini

diff --git a/pytest.ini b/pytest.ini
new file mode 100644
index 0000000..1aa9fc2
--- /dev/null
+++ b/pytest.ini
@@ -0,0 +1,8 @@
+[pytest]
+addopts =
+    --ignore-glob=_*
+    --import-mode=importlib
+pythonpath = .
+python_files = *.py
+python_functions = test_*
+norecursedirs = examples files_for_examples modules plugins

From decc441e09b63d60ac4dfdf11914450cefc28e0b Mon Sep 17 00:00:00 2001
From: Pedro Lacerda <pslacerda@gmail.com>
Date: Sun, 22 Jun 2025 03:17:28 -0300
Subject: [PATCH 2/5] Example test

---
 findseq.py | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/findseq.py b/findseq.py
index 07d73a5..8cbcbb6 100644
--- a/findseq.py
+++ b/findseq.py
@@ -203,3 +203,11 @@ def checkParams(needle, haystack, selName, het, matchMode):
         print("Error: selName was not a string.")
         return False
     return True
+
+
+def test_findseq():
+    cmd.fab('ACDEFG', 'm1')
+    cmd.fab('HIKLMN', 'm2')
+    cmd.do('findseq DEF, *, foundSeq')
+    assert cmd.count_atoms("foundSeq and m1") == 47
+    assert cmd.count_atoms("foundSeq and m2") == 0

From 8b032f8d9e441566a05798fabfb6d2a1fa56771a Mon Sep 17 00:00:00 2001
From: Thomas Holder <thomas@thomas-holder.de>
Date: Sun, 22 Jun 2025 20:53:02 +0200
Subject: [PATCH 3/5] Github actions

---
 .github/workflows/ci.yml | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)
 create mode 100644 .github/workflows/ci.yml

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..52b7d07
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,24 @@
+name: CI
+
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ubuntu-22.04
+    steps:
+    - uses: actions/checkout@v4
+
+    - uses: mamba-org/setup-micromamba@v2
+      with:
+        generate-run-shell: true
+        environment-name: ci
+        create-args: >-
+          pillow
+          pymol-open-source
+          pyopengl
+          pytest
+          requests
+
+    - name: Test
+      run: python3 -m pytest -v
+      shell: micromamba-shell {0}

From fc23a4bb0ad1f0763925ec97a5aad89744648dec Mon Sep 17 00:00:00 2001
From: Thomas Holder <thomas@thomas-holder.de>
Date: Sun, 22 Jun 2025 21:08:19 +0200
Subject: [PATCH 4/5] test_findseq: Call cmd.reinitialize()

---
 findseq.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/findseq.py b/findseq.py
index 8cbcbb6..0672c02 100644
--- a/findseq.py
+++ b/findseq.py
@@ -206,6 +206,7 @@ def checkParams(needle, haystack, selName, het, matchMode):
 
 
 def test_findseq():
+    cmd.reinitialize()
     cmd.fab('ACDEFG', 'm1')
     cmd.fab('HIKLMN', 'm2')
     cmd.do('findseq DEF, *, foundSeq')

From 8da682d13002968e53654e9b0d9113c6ed131442 Mon Sep 17 00:00:00 2001
From: Thomas Holder <thomas@thomas-holder.de>
Date: Sun, 22 Jun 2025 21:19:55 +0200
Subject: [PATCH 5/5] Pytest ignore gendocs.py

---
 pytest.ini | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pytest.ini b/pytest.ini
index 1aa9fc2..7095195 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -1,6 +1,7 @@
 [pytest]
 addopts =
     --ignore-glob=_*
+    --ignore-glob=gendocs.py
     --import-mode=importlib
 pythonpath = .
 python_files = *.py