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-`ves_cls/`: Supervised deep learning tools for vesicle classification
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-`ves_embed/`: Unsupervised deep learning tools for VAE embedding
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-`ves_check/`: Web-based proofreading toolbox for vesicle segmentation/classification results
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-`ves_vis/`: Visualization for multiple use cases
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-`data/`: Data processing scripts to work with annotation tools (e.g., [VAST lite](https://lichtman.rc.fas.harvard.edu/vast/)) and visualization tools (e.g., [Neuroglancer](https://github.com/google/neuroglancer))
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