[FIX] Fix jax and os.fork warnings (#557)

* updates experiments

* remove latex in interactive plot

* tmp: upload build reports from sphinx-tojupyter

* tst: upgrade kaleido in the pip install?

* FIX: -c plolty not giving a recent enough version of plotly

* Update lectures/back_prop.md

* install chrome in linux, remove from back_prop

* revert to use in-lecture option using kaleido to install chrome

* add new mimetype being emited

* suppress unknown mimetype warnings -- colab as specialized output json now

* tidy up and revert $ in plotly

* Update .github/workflows/ci.yml

Co-authored-by: Copilot <[email protected]>

---------

Co-authored-by: mmcky <[email protected]>
Co-authored-by: Matt McKay <[email protected]>
Co-authored-by: Copilot <[email protected]>

Author: 3 people

.github/workflows/ci.yml

@@ -53,7 +53,7 @@ jobs:
         uses: actions/upload-artifact@v4
         if: failure()
         with:
-          name: execution-reports
+          name: execution-reports-notebooks
           path: _build/jupyter/reports
       - name: Build PDF from LaTeX
         shell: bash -l {0}

lectures/_config.yml

@@ -37,6 +37,7 @@ sphinx:
     # false-positive links
     linkcheck_ignore: ['https://online.stat.psu.edu/stat415/book/export/html/834']
     bibtex_reference_style: author_year
+    suppress_warnings: ["mystnb.unknown_mime_type"]
     nb_mime_priority_overrides: [
        # HTML
        ['html', 'application/vnd.jupyter.widget-view+json', 10],

lectures/back_prop.md

@@ -16,25 +16,17 @@ kernelspec:
 ```{include} _admonition/gpu.md
 ```
 
-```{code-cell} ipython3
-:tags: [skip-execution]
-
-!pip install --upgrade jax
-```
-
-```{code-cell} ipython3
-import jax
-## to check that gpu is activated in environment
-print(f"JAX backend: {jax.devices()[0].platform}")
-```
-
 In addition to what's included in base Anaconda, we need to install the following packages
 
 ```{code-cell} ipython3
 :tags: [hide-output]
 
-!pip install kaleido
-!conda install -y -c plotly plotly plotly-orca retrying
+!pip install -U kaleido plotly
+!conda install -y -c plotly plotly-orca
+
+# kaleido needs chrome to build images
+import kaleido
+kaleido.get_chrome_sync()
 ```
 
 ```{note}
@@ -44,6 +36,19 @@ the Python packages. However this lecture will still execute as Google Colab
 has `plotly` installed.
 ```
 
+We also need to install JAX to run this lecture
+
+```{code-cell} ipython3
+:tags: [skip-execution]
+
+!pip install --upgrade jax
+```
+
+```{code-cell} ipython3
+import jax
+print(f"JAX backend: {jax.devices()[0].platform}") # to check that gpu is activated in environment
+```
+
 ## Overview
 
 Substantial parts of **machine learning** and **artificial intelligence** are about 

lectures/status.md

@@ -33,16 +33,16 @@ and the following package versions
 !conda list
 ```
 
+This lecture series has access to the following GPU
+
+```{code-cell} ipython
+!nvidia-smi
+```
+
 You can check the backend used by JAX using:
 
 ```{code-cell} ipython3
 import jax
 # Check if JAX is using GPU
 print(f"JAX backend: {jax.devices()[0].platform}")
-```
-
-and this lecture series also has access to the following GPU
-
-```{code-cell} ipython
-!nvidia-smi
 ```