Merge pull request #15 from snoweye/master

snoweye · web-flow · commit e929298b3b1d · 2016-12-17T10:58:56.000-05:00
minor changes
diff --git a/ChangeLog b/ChangeLog
@@ -1,3 +1,6 @@
+2016-12-17: Ver. 0.1-8
+  * Change web address.
+
 2015-11-01: Ver. 0.1-7
   * Change SPMD.CT$* to .pbd_env$SPMD.CT$*.
 
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: pmclust
-Version: 0.1-8
-Date: 2016-09-21
+Version: 0.1-9
+Date: 2016-12-17
 Title: Parallel Model-Based Clustering using
         Expectation-Gathering-Maximization Algorithm for Finite Mixture
         Gaussian Model
@@ -30,3 +30,4 @@ BugReports: http://group.r-pbd.org/
 MailingList: Please send questions and comments regarding pbdR to
         RBigData@gmail.com
 NeedsCompilation: yes
+Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
diff --git a/inst/doc/pmclust-guide.Rnw b/inst/doc/pmclust-guide.Rnw
@@ -57,7 +57,7 @@ Oak Ridge, TN, USA
 \Address{
   Wei-Chen Chen\\
   E-mail: \email{wccsnow@gmail.com}\\
-  URL: \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
+  URL: \url{http:///snoweye.github.io/}
 }
 %% It is also possible to add a telephone and fax number
 %% before the e-mail in the following format:
diff --git a/inst/doc/pmclust-guide.pdf b/inst/doc/pmclust-guide.pdf
diff --git a/man/00_pmclust-package.Rd b/man/00_pmclust-package.Rd
@@ -43,9 +43,6 @@
   dispersions.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 
diff --git a/man/01-pmclust_pkmeans.Rd b/man/01-pmclust_pkmeans.Rd
@@ -46,9 +46,6 @@
   for details.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/10_d.readme.Rd b/man/10_d.readme.Rd
@@ -80,9 +80,6 @@
   such as \code{.pmclustEnv$CONTROL}.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/11_d.set.global.Rd b/man/11_d.set.global.Rd
@@ -65,9 +65,6 @@
   set by this function.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/12_d.param.Rd b/man/12_d.param.Rd
@@ -39,9 +39,6 @@
   are only used in computing.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/13_d.control.Rd b/man/13_d.control.Rd
@@ -63,9 +63,6 @@
   See \code{\link{e.step}} for more information about computing.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/20-assign.N.sample.Rd b/man/20-assign.N.sample.Rd
@@ -38,9 +38,6 @@
   \code{N.spmd} for \code{ID.spmd}.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/30-em.one.Rd b/man/30-em.one.Rd
@@ -40,9 +40,6 @@
   for details.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/30-em.one.e.Rd b/man/30-em.one.e.Rd
@@ -47,9 +47,6 @@
   See \code{\link{CONTROL}} for details about constrains on E- and M-steps.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/30-em.one.m.Rd b/man/30-em.one.m.Rd
@@ -29,9 +29,6 @@
   likelihood for the current iteration.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/30-em_initial.Rd b/man/30-em_initial.Rd
@@ -67,9 +67,6 @@
   for details.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 
diff --git a/man/30-em_like.Rd b/man/30-em_like.Rd
@@ -50,9 +50,6 @@
   for details.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 
diff --git a/man/40-generate.MixSim.Rd b/man/40-generate.MixSim.Rd
@@ -58,9 +58,6 @@
   \emph{Journal of Statistical Software},
   (accepted).
 
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/40-generate.basic.Rd b/man/40-generate.basic.Rd
@@ -55,9 +55,6 @@
 }
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/41-get.N.CLASS.Rd b/man/41-get.N.CLASS.Rd
@@ -41,9 +41,6 @@
 \references{
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
-
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
 }
 \author{
   Wei-Chen Chen \email{wccsnow@gmail.com} and George Ostrouchov.
diff --git a/man/50-as.dmat.spmd.Rd b/man/50-as.dmat.spmd.Rd
@@ -32,9 +32,6 @@
   A \code{ddmatrix} is returned.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/50-indep.logL.Rd b/man/50-indep.logL.Rd
@@ -32,9 +32,6 @@
   large difference indicates bugs of code or illness of data.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/50-mb.print.Rd b/man/50-mb.print.Rd
@@ -20,9 +20,6 @@
   Summarized messages will print/cat on screen by default.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/50-update.class.Rd b/man/50-update.class.Rd
@@ -26,9 +26,6 @@
   \code{\link{CLASS.spmd}} will be updated.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/man/60-print.Rd b/man/60-print.Rd
@@ -21,9 +21,6 @@
   The results will cat or print on the STDOUT by default.
 }
 \references{
-  % High Performance Statistical Computing (HPSC) Website:
-  % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
-
   Programming with Big Data in R Website:
   \url{http://r-pbd.org/}
 }
diff --git a/vignettes/pmclust-guide.Rnw b/vignettes/pmclust-guide.Rnw
@@ -57,7 +57,7 @@ Oak Ridge, TN, USA
 \Address{
   Wei-Chen Chen\\
   E-mail: \email{wccsnow@gmail.com}\\
-  URL: \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
+  URL: \url{http:///snoweye.github.io/}
 }
 %% It is also possible to add a telephone and fax number
 %% before the e-mail in the following format:
diff --git a/vignettes/pmclust-include/04-discussion.tex b/vignettes/pmclust-include/04-discussion.tex
@@ -33,7 +33,7 @@
 applied to large datasets.
 See more SPMD examples on the website
 ``High Performance Statistical Computing''~\citep{hpsc2012} at
-\url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}.
+\url{http://snoweye.github.io/hpsc/}.
 See more applications on the website
 ``Programming with Big Data in R'' at
 \url{http://r-pbd.org/}.
diff --git a/vignettes/pmclust-include/pmclust.bib b/vignettes/pmclust-include/pmclust.bib
@@ -99,7 +99,7 @@ @MISC{hpsc2012
   author = {Chen, W.-C. and Ostrouchov, G.},
   title = {HPSC -- High Performance Statistical Computing for Data Intensive Research},
   year = {2012},
-  url = {http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}
+  url = {http://snoweye.github.io/hpsc/}
 }
 @MISC{Chen2012pbdMPIpackage,
   author = {Chen, W.-C. and Ostrouchov, G. and Schmidt, D. and Patel, P. and

Original file line number	Diff line number	Diff line change
`@@ -57,7 +57,7 @@ Oak Ridge, TN, USA`
`57`	`57`	`\Address{`
`58`	`58`	`Wei-Chen Chen\\`
`59`	`59`	`E-mail: \email{[email protected]}\\`
`60`		`- URL: \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
	`60`	`+ URL: \url{http:///snoweye.github.io/}`
`61`	`61`	`}`
`62`	`62`	`%% It is also possible to add a telephone and fax number`
`63`	`63`	`%% before the e-mail in the following format:`
Original file line number	Diff line number	Diff line change
`@@ -43,9 +43,6 @@`
`43`	`43`	`dispersions.`
`44`	`44`	`}`
`45`	`45`	`\references{`
`46`		`- % High Performance Statistical Computing (HPSC) Website:`
`47`		`- % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
`48`		`-`
`49`	`46`	`Programming with Big Data in R Website:`
`50`	`47`	`\url{http://r-pbd.org/}`
`51`	`48`
Original file line number	Diff line number	Diff line change
`@@ -46,9 +46,6 @@`
`46`	`46`	`for details.`
`47`	`47`	`}`
`48`	`48`	`\references{`
`49`		`- % High Performance Statistical Computing (HPSC) Website:`
`50`		`- % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
`51`		`-`
`52`	`49`	`Programming with Big Data in R Website:`
`53`	`50`	`\url{http://r-pbd.org/}`
`54`	`51`	`}`
Original file line number	Diff line number	Diff line change
`@@ -80,9 +80,6 @@`
`80`	`80`	`such as \code{.pmclustEnv$CONTROL}.`
`81`	`81`	`}`
`82`	`82`	`\references{`
`83`		`- % High Performance Statistical Computing (HPSC) Website:`
`84`		`- % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
`85`		`-`
`86`	`83`	`Programming with Big Data in R Website:`
`87`	`84`	`\url{http://r-pbd.org/}`
`88`	`85`	`}`
Original file line number	Diff line number	Diff line change
`@@ -65,9 +65,6 @@`
`65`	`65`	`set by this function.`
`66`	`66`	`}`
`67`	`67`	`\references{`
`68`		`- % High Performance Statistical Computing (HPSC) Website:`
`69`		`- % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
`70`		`-`
`71`	`68`	`Programming with Big Data in R Website:`
`72`	`69`	`\url{http://r-pbd.org/}`
`73`	`70`	`}`
Original file line number	Diff line number	Diff line change
`@@ -39,9 +39,6 @@`
`39`	`39`	`are only used in computing.`
`40`	`40`	`}`
`41`	`41`	`\references{`
`42`		`- % High Performance Statistical Computing (HPSC) Website:`
`43`		`- % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
`44`		`-`
`45`	`42`	`Programming with Big Data in R Website:`
`46`	`43`	`\url{http://r-pbd.org/}`
`47`	`44`	`}`
Original file line number	Diff line number	Diff line change
`@@ -63,9 +63,6 @@`
`63`	`63`	`See \code{\link{e.step}} for more information about computing.`
`64`	`64`	`}`
`65`	`65`	`\references{`
`66`		`- % High Performance Statistical Computing (HPSC) Website:`
`67`		`- % \url{http://thirteen-01.stat.iastate.edu/snoweye/hpsc/}`
`68`		`-`
`69`	`66`	`Programming with Big Data in R Website:`
`70`	`67`	`\url{http://r-pbd.org/}`
`71`	`68`	`}`