Missing metadata in log file

[xtrojak]

Currently, source metadata is written to the log file with all associated warnings and errors. However, if there is an issue related to metadata obtained during the annotation process (e.g. BridgeDB: hmdbid -> wikidataid in the example below), it is not present.

WARNING: Errors related to metadata:

{'formula': 'H2', 'mw': '2', 'casno': '1333-74-0', 'id': '1', 'comment': 'NIST MS# 245692, Seq# M1', 'num_peaks': '2', 'compound_name': 'Hydrogen'}

-> InvalidAttributeFormat - CIR: casno -> smiles:
 Obtained smiles in invalid format: [H]
-> TargetAttributeNotRetrieved - CIR: casno -> smiles:
No data retrieved.
-> TargetAttributeNotRetrieved - BridgeDB: hmdbid -> wikidataid:
No data retrieved.