updated galaxy profile

hechth · hechth · commit 8174abc19964 · 2025-05-16T09:45:41.000+02:00
diff --git a/tools/ipapy2/ipapy2_MS1_annotation.xml b/tools/ipapy2/ipapy2_MS1_annotation.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_MS1_annotation" name="ipaPy2 MS1 annotation" version="@TOOL_VERSION@+galaxy0" profile="21.09">
+<tool id="ipapy2_MS1_annotation" name="ipaPy2 MS1 annotation" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>annotate clustered features using a supplied MS1 database</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/ipapy2_MS2_annotation.xml b/tools/ipapy2/ipapy2_MS2_annotation.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_MS2_annotation" name="ipaPy2 MS2 annotation" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_MS2_annotation" name="ipaPy2 MS2 annotation" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>annotate features from MS2 using a supplied MS2 database</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/ipapy2_clustering.xml b/tools/ipapy2/ipapy2_clustering.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_clustering" name="ipaPy2 clustering" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_clustering" name="ipaPy2 clustering" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>clustering MS1 features based on correlation across samples as preparation for ipaPy2</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/ipapy2_compute_all_adducts.xml b/tools/ipapy2/ipapy2_compute_all_adducts.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_compute_all_adducts" name="ipaPy2 compute all adducts" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_compute_all_adducts" name="ipaPy2 compute all adducts" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>compute the compound database with adducts</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/ipapy2_compute_bio.xml b/tools/ipapy2/ipapy2_compute_bio.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_compute_bio" name="ipaPy2 compute bio" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_compute_bio" name="ipaPy2 compute bio" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>compute list of biochemical connections to improve annotation accuracy</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/ipapy2_gibbs_sampler.xml b/tools/ipapy2/ipapy2_gibbs_sampler.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_gibbs_sampler" name="ipaPy2 gibbs sampler" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_gibbs_sampler" name="ipaPy2 gibbs sampler" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>combine multiple information sources in a Gibbs sampler to improve annotation accuracy</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/ipapy2_gibbs_sampler_add.xml b/tools/ipapy2/ipapy2_gibbs_sampler_add.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_gibbs_sampler_add" name="ipaPy2 gibbs sampler additive" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_gibbs_sampler_add" name="ipaPy2 gibbs sampler additive" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <macros>
         <import>macros.xml</import>
     </macros>
diff --git a/tools/ipapy2/ipapy2_map_isotope_patterns.xml b/tools/ipapy2/ipapy2_map_isotope_patterns.xml
@@ -1,4 +1,4 @@
-<tool id="ipapy2_map_isotope_patterns" name="ipaPy2 map isotope patterns" version="@TOOL_VERSION@+galaxy0" profile="21.05">
+<tool id="ipapy2_map_isotope_patterns" name="ipaPy2 map isotope patterns" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
     <description>detect isotopes in clusters</description>
     <macros>
         <import>macros.xml</import>
diff --git a/tools/ipapy2/macros.xml b/tools/ipapy2/macros.xml
@@ -1,5 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.3.0</token>
+    <token name="@PROFILE@">23.0</token>
 
     <xml name="citations">
         <citations>

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_MS1_annotation" name="ipaPy2 MS1 annotation" version="@TOOL_VERSION@+galaxy0" profile="21.09">`
	`1`	`+<tool id="ipapy2_MS1_annotation" name="ipaPy2 MS1 annotation" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>annotate clustered features using a supplied MS1 database</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_MS2_annotation" name="ipaPy2 MS2 annotation" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_MS2_annotation" name="ipaPy2 MS2 annotation" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>annotate features from MS2 using a supplied MS2 database</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_clustering" name="ipaPy2 clustering" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_clustering" name="ipaPy2 clustering" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>clustering MS1 features based on correlation across samples as preparation for ipaPy2</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_compute_all_adducts" name="ipaPy2 compute all adducts" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_compute_all_adducts" name="ipaPy2 compute all adducts" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>compute the compound database with adducts</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_compute_bio" name="ipaPy2 compute bio" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_compute_bio" name="ipaPy2 compute bio" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>compute list of biochemical connections to improve annotation accuracy</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_gibbs_sampler" name="ipaPy2 gibbs sampler" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_gibbs_sampler" name="ipaPy2 gibbs sampler" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>combine multiple information sources in a Gibbs sampler to improve annotation accuracy</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_gibbs_sampler_add" name="ipaPy2 gibbs sampler additive" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_gibbs_sampler_add" name="ipaPy2 gibbs sampler additive" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<macros>`
`3`	`3`	`<import>macros.xml</import>`
`4`	`4`	`</macros>`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-<tool id="ipapy2_map_isotope_patterns" name="ipaPy2 map isotope patterns" version="@TOOL_VERSION@+galaxy0" profile="21.05">`
	`1`	`+<tool id="ipapy2_map_isotope_patterns" name="ipaPy2 map isotope patterns" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">`
`2`	`2`	`<description>detect isotopes in clusters</description>`
`3`	`3`	`<macros>`
`4`	`4`	`<import>macros.xml</import>`